Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0233
         (344 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    27   0.083
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    27   0.083
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   0.77 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   2.3  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   5.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    20   7.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   7.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   7.2  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    20   9.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   9.5  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 26.6 bits (56), Expect = 0.083
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 294 EWPFDIRRRTRLFVRTPCFI 235
           EWP  +R+R  LF+   CF+
Sbjct: 406 EWPRLLRKRKELFIAIVCFV 425


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 26.6 bits (56), Expect = 0.083
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 294 EWPFDIRRRTRLFVRTPCFI 235
           EWP  +R+R  LF+   CF+
Sbjct: 459 EWPRLLRKRKELFIAIVCFV 478


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 0.77
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = -1

Query: 227 LACRCRQRHEVHSPSIHRLTDQPLLRRP-CAFRKRYEACARPPLRTTSGIPLPGTKRLT 54
           ++ R   RH VHS +   +  + LL+R  C  RK          R  +  PL    ++T
Sbjct: 52  ISSRRNGRHNVHSLAFGAIQLRQLLKRQLCEKRKEVSIITEDSSRKQTIDPLSSNTQIT 110


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 140 RMGAEVEADQLGDEWKGYV 196
           R+G  +++D L +  +GYV
Sbjct: 227 RIGLRIQSDSLAENVEGYV 245


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 99  SNNFWHPVAGYETFN 55
           +NN ++P   Y TFN
Sbjct: 222 TNNLFYPYPPYGTFN 236


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +2

Query: 83  CQKLFEVVDEHKLRIFYEKRMGAEVEAD 166
           CQ  F+        +  EKR G  VE D
Sbjct: 43  CQNWFDKFRSGDFSLKDEKRSGRPVEVD 70


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 120 SLCSSTTSNNFWHP 79
           S  SS+  N+FW P
Sbjct: 376 SSISSSEENDFWQP 389


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 215 CRQRHEVHSPSI 180
           CR RHE+ S  +
Sbjct: 522 CRPRHEIRSTDV 533


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 154 FGAHALFVKDTKLVLVHHFEQLLA 83
           F   AL  KD+K  +VH     LA
Sbjct: 256 FATSALVSKDSKFNMVHIQNSTLA 279


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 240 FIGNPCLSLPP 208
           ++G  C+SLPP
Sbjct: 166 WLGAACISLPP 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,498
Number of Sequences: 438
Number of extensions: 1930
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)