Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0233
         (344 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   132   6e-32
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             131   1e-31
At1g21740.1 68414.m02721 expressed protein contains Pfam domains...    29   0.83 
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl...    29   1.1  
At1g60540.1 68414.m06815 dynamin family protein similar to SP|Q9...    27   2.5  
At4g31240.2 68417.m04435 expressed protein                             27   3.4  
At4g31240.1 68417.m04434 expressed protein                             27   3.4  
At5g54560.1 68418.m06792 hypothetical protein contains Pfam prof...    27   4.4  
At5g54550.1 68418.m06791 expressed protein contains Pfam profile...    26   5.9  
At5g24330.1 68418.m02867 PHD finger family protein / SET domain-...    26   7.7  

>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  132 bits (319), Expect = 6e-32
 Identities = 62/100 (62%), Positives = 75/100 (75%), Gaps = 2/100 (2%)
 Frame = +2

Query: 50  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 229
           MK NV+ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query: 230 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVR 343
           FPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVR
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVR 100


>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  131 bits (316), Expect = 1e-31
 Identities = 61/100 (61%), Positives = 75/100 (75%), Gaps = 2/100 (2%)
 Frame = +2

Query: 50  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 229
           MK NV+ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 230 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVR 343
           FPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVR
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVR 100


>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 953

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 86  QKLF-EVVDEHKLRIFYEKRMGAEVEADQLGDE 181
           +KL+ EV DE KLR+ YE++     + D LG E
Sbjct: 602 KKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634


>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
           glyoxalase I, putative similar to putative
           lactoylglutathione lyase SP:Q39366, GI:2494843 from
           [Brassica oleracea]
          Length = 350

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +2

Query: 71  PATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPM 238
           P   CQ +  V D  +   FYEK  G E+   +   E+K Y + + G   +  FP+
Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270


>At1g60540.1 68414.m06815 dynamin family protein similar to
           SP|Q91192 Interferon-induced GTP-binding protein Mx
           {Oncorhynchus mykiss}; contains Pfam profiles PF01031:
           Dynamin central region, PF00350: Dynamin family,
           PF02212: Dynamin GTPase effector domain
          Length = 648

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 8   ELVDPRAAGGIDAVMK 55
           E+VDPRA GGID +++
Sbjct: 594 EMVDPRAGGGIDRMLE 609


>At4g31240.2 68417.m04435 expressed protein
          Length = 392

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 244 LFHRESLLVVAASDTKYIALPFIA*LISLYFGAH 143
           L H     VVA + +K +    +   I LYFGAH
Sbjct: 180 LTHESRNYVVARNGSKVLVSKLVGKTIGLYFGAH 213


>At4g31240.1 68417.m04434 expressed protein
          Length = 392

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 244 LFHRESLLVVAASDTKYIALPFIA*LISLYFGAH 143
           L H     VVA + +K +    +   I LYFGAH
Sbjct: 180 LTHESRNYVVARNGSKVLVSKLVGKTIGLYFGAH 213


>At5g54560.1 68418.m06792 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 360

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -1

Query: 245 PVSSGILACRCRQRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACAR 108
           P S G L      R E H+P I RL  + L   P A R+  ++C R
Sbjct: 202 PGSGGHLIGSWDPRTEDHNPKIQRLRFRNLPELPRAKRELLDSCYR 247


>At5g54550.1 68418.m06791 expressed protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 359

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -1

Query: 245 PVSSGILACRCRQRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACAR 108
           P S G L      R E H+P I RL  + L   P A R+  ++C R
Sbjct: 200 PGSGGHLIGSWDLRTEDHNPKIQRLRFRNLPELPRAKRELLDSCYR 245


>At5g24330.1 68418.m02867 PHD finger family protein / SET
           domain-containing protein contains Pfam domain, PF00628:
           PHD-finger and PF00856: SET domain
          Length = 349

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +2

Query: 32  GGIDAVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEW 184
           GG+  + K  V   A  C+K+ ++ +   L + ++   G  VEAD+   +W
Sbjct: 188 GGMQVLSKEGVETLAL-CKKMMDLGECPPLMVVFDPYEGFTVEADRFIKDW 237


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,771,556
Number of Sequences: 28952
Number of extensions: 154757
Number of successful extensions: 446
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)