Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0229
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    31   0.12 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   1.9  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    26   3.4  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   4.5  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    25   4.5  
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    25   5.9  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   5.9  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   5.9  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    25   7.9  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    25   7.9  

>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 30.7 bits (66), Expect = 0.12
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +3

Query: 117 THLDMIGRNETP----SKKARFWQSFVRSLKGSEDIRAEERYRPTRR 245
           T  +  GR+ +P    S+K R  +  +RS   S   R E+RYRPTRR
Sbjct: 201 TERNRYGRSPSPHSRFSEKPRGERYDIRSYSRSHKERYEDRYRPTRR 247


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
 Frame = +3

Query: 201 SEDIRAEERYRPTRRSVFPELLSTYPYSKSIYDDPIAAAERITVPGYRYLPVHREI---Y 371
           S D+   E     RR+  P+    +  SK+ Y  P    E I     +   V +     Y
Sbjct: 573 SSDVHKNENAGTARRA--PQS-GAFVASKAKYSSPYDLPEEIVQVAQQKRSVSQNYNRQY 629

Query: 372 GYSPRPIYAHNYPRSL 419
            + PRP    N PRSL
Sbjct: 630 SFQPRPATPSNPPRSL 645


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 20/68 (29%), Positives = 24/68 (35%)
 Frame = +3

Query: 240 RRSVFPELLSTYPYSKSIYDDPIAAAERITVPGYRYLPVHREIYGYSPRPIYAHNYPRSL 419
           RR V+      YP  K  Y    +A +    PG       R     SP    A    R  
Sbjct: 665 RRMVWAWRGEYYPAKKGEYHMIYSALQSERFPGPTPFSPFRSFQELSPSEQAAMVQKRIA 724

Query: 420 DYYRPIYH 443
           DY R +YH
Sbjct: 725 DYSRKVYH 732


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +3

Query: 318 ERITVPGYRYLPVHREIYGYSPRPIYAHNYPRSLDYYRPIY 440
           ++ +V  Y   P H      S RPI  +N     DY   +Y
Sbjct: 875 DKDSVDAYNRFPFHSYFGDKSKRPIETYNKDNFFDYATKLY 915


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 202 RKTSEPRKGTGQHAAA--FFPNSCRPTLTPSRFT 297
           ++T+  + GT  +A A  F PN   P  TP +FT
Sbjct: 415 KETTGTKLGTKLNAKAISFKPNVAAPVFTPGKFT 448


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +1

Query: 295 TTTLSLPLRGLRYPATVTCLSIA---RSTATPRALSMPTTTLALSIITGQS 438
           T + S  L G+R    +T   IA    S   P  +S PT+ LAL  ++ QS
Sbjct: 220 TLSKSFGLAGIRIGFCLTSKPIATIMNSLKAPYNISEPTSRLALDALSPQS 270


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 18/90 (20%), Positives = 33/90 (36%)
 Frame = +1

Query: 175 SPSCVL*KVRKTSEPRKGTGQHAAAFFPNSCRPTLTPSRFTTTLSLPLRGLRYPATVTCL 354
           +PS  L      S  +           P+S +   T S FTT +++      +P T+   
Sbjct: 484 TPSSYLSNTTLHSSVQSSQSSQFTVSVPSSTQSYSTSSNFTTPITISTSLSSFPTTIVSS 543

Query: 355 SIARSTATPRALSMPTTTLALSIITGQSTT 444
           S   S+ +    +    + +LS     + T
Sbjct: 544 SFQYSSLSSNVTTTNAQSSSLSSSNSSALT 573


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 20/79 (25%), Positives = 38/79 (48%)
 Frame = +2

Query: 134 WQKRDAVEESQILAVLRAFSKRFGRHQSRGKVQANTPQRFSRTPVDLPLLQVDLRRPYRC 313
           W+  D +   ++ AV+ A ++        G++  ++P R +  P+ + L  V   +    
Sbjct: 719 WETPD-IRVMRVKAVMPANNRAAVLRIYAGRLGVSSPVRTAPHPMAMSLPFVHHGKNKAL 777

Query: 314 R*EDYGTRLPLPACPSRDL 370
              ++ TR P+P CPS DL
Sbjct: 778 ---EFVTRHPVPHCPSVDL 793


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = +1

Query: 298 TTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTCQD 453
           TT S PL     P+ V C  IA +     ALS+     A     G   TC+D
Sbjct: 82  TTYSYPLISGGAPSAVWCWLIAGAGCMCIALSVAELVSAYPTSGGLYFTCKD 133


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 210 CLPNLLENARRTAKIWLSSTASRFCQSCLNV 118
           C   +L +AR   K WLSS  S      LN+
Sbjct: 157 CDEEILVDARNQIKNWLSSELSHSTSKYLNI 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,945,041
Number of Sequences: 5004
Number of extensions: 40589
Number of successful extensions: 147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)