Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0229
(476 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1181 + 10148653-10149405 33 0.16
07_03_0518 + 19007793-19008722 31 0.48
07_03_0512 - 18954515-18955972 31 0.64
07_03_0514 + 18984375-18985865 29 1.5
02_04_0271 + 21445113-21445865,21446727-21446788,21446927-214470... 28 3.4
10_08_0739 + 20217842-20218852 28 4.5
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 28 4.5
07_03_0515 + 18992296-18993720 27 5.9
06_01_0875 + 6707483-6709394,6709750-6709829,6710077-6710174,671... 27 7.8
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 27 7.8
02_03_0138 - 15629421-15629440,15629521-15629752,15630115-156303... 27 7.8
>06_01_1181 + 10148653-10149405
Length = 250
Score = 32.7 bits (71), Expect = 0.16
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 339 YRYLPVHREIYGYSPRPIYAHNYPRSLDYYRPIYHVPRRVRRG 467
+RY+ VH +Y P+ + YP ++ P HV VR G
Sbjct: 155 FRYVQVHHPVYAAPGEPVQGYGYPVAMSSALPAPHVHVGVRGG 197
>07_03_0518 + 19007793-19008722
Length = 309
Score = 31.1 bits (67), Expect = 0.48
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -1
Query: 476 GINSTSHASWHVVD---WPVIIERARVVVGIDRARGVAVDLAMDRQ 348
G NST + WH V WP+ E+ + R GVAV++ +DR+
Sbjct: 198 GWNSTLESLWHGVPMAPWPLYAEQHLNAFELVRDMGVAVEMEVDRK 243
>07_03_0512 - 18954515-18955972
Length = 485
Score = 30.7 bits (66), Expect = 0.64
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -1
Query: 476 GINSTSHASWH---VVDWPVIIERARVVVGIDRARGVAVDLAMD 354
G NST + WH +V WP+ E+ + R GVAV L +D
Sbjct: 369 GWNSTLESLWHGVPLVPWPLYAEQRLNAFELVRDMGVAVPLGVD 412
>07_03_0514 + 18984375-18985865
Length = 496
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -1
Query: 476 GINSTSHASWHVVD---WPVIIERARVVVGIDRARGVAVDLAMDRQ 348
G NS + WH V WP+ E+ + R GVAV L +DR+
Sbjct: 381 GWNSVLESLWHGVPMAPWPLYAEQHLNAFELVRDMGVAVPLGVDRE 426
>02_04_0271 +
21445113-21445865,21446727-21446788,21446927-21447027,
21447165-21447248,21448054-21448058,21448193-21448267,
21448339-21448416,21448896-21448952,21449351-21449421,
21449529-21449628,21449758-21449862,21450004-21450066,
21450144-21450266,21450371-21450514,21450598-21450672
Length = 631
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +1
Query: 10 GPTLDVGSSTTPHYPI*LRPLFNRIRARHRPPKCSKHI 123
GPT SS+ H P RIRA P+CSKH+
Sbjct: 47 GPTSSSSSSSDEHEP-------RRIRAEAHCPRCSKHM 77
>10_08_0739 + 20217842-20218852
Length = 336
Score = 27.9 bits (59), Expect = 4.5
Identities = 20/72 (27%), Positives = 26/72 (36%)
Frame = +2
Query: 242 PQRFSRTPVDLPLLQVDLRRPYRCR*EDYGTRLPLPACPSRDLRLLPAPYLCPQLPSLSR 421
P S LP + P+R PLP PS L L+P+ P LP L+
Sbjct: 26 PSLISHLGAGLPAFAAGIHCPHR-------VSFPLPTAPSASLLLMPSWSAHPSLPYLAL 78
Query: 422 LLQANLPRAKTR 457
+ P R
Sbjct: 79 KAVTSFPANSPR 90
>04_03_0024 -
9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 191 SKRFGRHQSRGKVQANTPQR-FSRTPVDLPLLQV-DLRRPYRCR 316
SKR +HQ+R T +R F R PV LP ++ +R P + +
Sbjct: 759 SKRIYKHQNRNNNNIRTKKRYFLRRPVRLPFKEILGIRIPVKVK 802
>07_03_0515 + 18992296-18993720
Length = 474
Score = 27.5 bits (58), Expect = 5.9
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = -1
Query: 476 GINSTSHASWH---VVDWPVIIERARVVVGIDRARGVAVDLAMDRQ 348
G NST + W +V WP+ E+ + A GVAV + +DR+
Sbjct: 365 GWNSTLESLWFGVPMVPWPLYAEQHLNAFTLVAAMGVAVAMKVDRK 410
>06_01_0875 +
6707483-6709394,6709750-6709829,6710077-6710174,
6710704-6710840,6710961-6711301,6711402-6711599
Length = 921
Score = 27.1 bits (57), Expect = 7.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 185 HEGLPKSGFLRRRLVSANHV*MCFEHFGGLCRARIRLN 72
H L + GF R +VS N + +C+ G +C AR N
Sbjct: 227 HNMLKRKGF-ERNVVSWNSMMICYIKAGDVCSARALFN 263
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 27.1 bits (57), Expect = 7.8
Identities = 21/69 (30%), Positives = 27/69 (39%)
Frame = +3
Query: 228 YRPTRRSVFPELLSTYPYSKSIYDDPIAAAERITVPGYRYLPVHREIYGYSPRPIYAHNY 407
Y PT + P S P S S P + + T P Y Y P YSP ++NY
Sbjct: 1683 YNPTSSAYSPTSPSYNPTSPSYSYSPTSPSYSPTSPSYSYSPTSP---SYSPTS-PSYNY 1738
Query: 408 PRSLDYYRP 434
+ Y P
Sbjct: 1739 SPTSPSYSP 1747
>02_03_0138 -
15629421-15629440,15629521-15629752,15630115-15630348,
15630486-15630709,15631225-15631509,15631549-15631690
Length = 378
Score = 27.1 bits (57), Expect = 7.8
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +3
Query: 141 NETPSKKARFWQSFVRSLKGSEDIRAEER 227
+E +++ WQ+F+ +KG E+ EE+
Sbjct: 135 HELATRQVECWQAFLSPMKGKEEDEGEEK 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,361,178
Number of Sequences: 37544
Number of extensions: 297443
Number of successful extensions: 939
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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