Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0229
(476 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.85
SB_50240| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_27891| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_39796| Best HMM Match : VWA (HMM E-Value=0) 28 4.5
SB_23337| Best HMM Match : Ank (HMM E-Value=5.1e-07) 28 4.5
SB_33346| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_18179| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_31811| Best HMM Match : Keratin_B2 (HMM E-Value=0.029) 27 6.0
SB_40486| Best HMM Match : C2 (HMM E-Value=2.9e-05) 27 7.9
SB_24809| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 32.7 bits (71), Expect = 0.16
Identities = 26/79 (32%), Positives = 35/79 (44%)
Frame = +1
Query: 208 TSEPRKGTGQHAAAFFPNSCRPTLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRA 387
TS P T ++ P++ P + TTT S P + T S A ST+TPR
Sbjct: 50 TSAPSTSTTSNSTTRAPSTSTPR---AGSTTTTSAPSTSTPRTGSTTTTS-APSTSTPRT 105
Query: 388 LSMPTTTLALSIITGQSTT 444
S TT+ + T STT
Sbjct: 106 GSTTTTSAPSTSTTSNSTT 124
Score = 28.3 bits (60), Expect = 3.4
Identities = 21/59 (35%), Positives = 27/59 (45%)
Frame = +1
Query: 268 RPTLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTT 444
R T + TT+ S P + T S A ST+TPR S TT+ + T STT
Sbjct: 6 RSTPGTTSITTSTSTPSTSTPRAGSTTNTS-APSTSTPRTGSTTTTSAPSTSTTSNSTT 63
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 30.3 bits (65), Expect = 0.85
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 134 WQKRDAVEESQILAVLRAFSKRFGRHQSRGKVQANTPQRFSRTPVDLP 277
W+ RD+ +S I AVL KR ++ R K N ++FS P
Sbjct: 4708 WKSRDSDSDSSIDAVLDEMEKRRAGYEDRRKSFENLKRKFSEPSCTSP 4755
>SB_50240| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 146 DAVEESQILAVLRAFSKRFGRHQSRGKVQANTPQRFSRTPVDLPLL 283
D E+ + +R F++ +GR + V+ANT + P L +L
Sbjct: 147 DETEDRRRAETMREFTREYGRGVRQANVRANTKKLTGTLPYSLSML 192
>SB_27891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 609
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 277 LTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLAL 417
L P RF + L R R+P ++ S ST R S P + +L
Sbjct: 346 LNPKRFWSIFKLKSRDFRFPGIMSIGSAENSTQPARLASTPASIASL 392
>SB_39796| Best HMM Match : VWA (HMM E-Value=0)
Length = 2119
Score = 27.9 bits (59), Expect = 4.5
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +1
Query: 259 NSCRPTLTPSRFTTTLSLPLRGLRYPATVTCLSIA--RSTATPRALSMPTTTLALSIITG 432
N+ TLT + T S + P TVT ++A ST+ A S TL + IT
Sbjct: 1818 NTRNATLTLTHHKTETSTAVAMTTVPHTVTTTAVALVNSTSVVMATSTAVATLTSTHITT 1877
Query: 433 QSTT 444
Q+ T
Sbjct: 1878 QTNT 1881
>SB_23337| Best HMM Match : Ank (HMM E-Value=5.1e-07)
Length = 213
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 224 KVQANTPQRFSRTPVDLPLLQVDLR 298
KV AN P +F RTP+ +L+ D+R
Sbjct: 140 KVDANLPGQFGRTPLHNAVLKGDMR 164
>SB_33346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1074
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +1
Query: 298 TTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTT 444
T+ ++P+ PAT ++A STAT +++ + + ++ +T STT
Sbjct: 282 TSTTVPVSSHVTPATGCNTTMATSTATVQSIDTEQSPIVITSVTPPSTT 330
>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +1
Query: 277 LTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTT 444
+T + TTT++ + T+T I + T + TTT+ +IIT TT
Sbjct: 1062 ITITNITTTINTTINTTIITTTITTTIITTTITTTIITTTITTTITTTIITTTVTT 1117
>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 27.5 bits (58), Expect = 6.0
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +1
Query: 295 TTTLSLPLRGL--RYPATVTCLSIARSTATPRALSMPT-TTLALSII 426
TT SLP + PATV+ SIA S TP + S T TTL S++
Sbjct: 1169 TTIYSLPPTSMLNSTPATVSIDSIAPSPTTPPSSSSTTITTLNASVM 1215
>SB_18179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = +1
Query: 274 TLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTCQD 453
T T + TTT + AT+T + +T T + TTT + T +TT ++
Sbjct: 6 TTTTTTTTTTTTTTTTTAATTATITTATATTTTTTTTTTTTTTTTTTTTTTTTTTTTTKN 65
Query: 454 ACD 462
D
Sbjct: 66 NDD 68
>SB_31811| Best HMM Match : Keratin_B2 (HMM E-Value=0.029)
Length = 138
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +1
Query: 262 SCRPTLTPSRFTTTLSLPLRGLRYPATVTC--LSIAR--STATPRAL 390
SCRP ++ PL +RY ++ TC L +AR S+AT R L
Sbjct: 61 SCRPLHVVRYMSSATCRPLHVVRYMSSATCRPLHVARFMSSATCRTL 107
>SB_40486| Best HMM Match : C2 (HMM E-Value=2.9e-05)
Length = 698
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 179 LRAFSKRFGRHQSRG-KVQANTPQRFSRTPVDLPLLQVDLRRPYRCR 316
L+ +SKRFGR +RG +V+ +R+ + L+ VD+ +CR
Sbjct: 118 LQRYSKRFGRADTRGIRVKNMLHGTGTRSIIRYTLMYVDVLVSAQCR 164
>SB_24809| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 780
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/62 (24%), Positives = 32/62 (51%)
Frame = +1
Query: 259 NSCRPTLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQS 438
++ P+ T + +T + LP+ + +++ STA P ++M T+T S + Q+
Sbjct: 224 STAMPSPTTRQTSTAIPLPMSRQISAVITSPMAMQTSTAIPSPMAMQTSTAIPSPMAMQT 283
Query: 439 TT 444
+T
Sbjct: 284 ST 285
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,364,375
Number of Sequences: 59808
Number of extensions: 338358
Number of successful extensions: 1370
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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