Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0229
         (476 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    25   0.55 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.55 
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              22   2.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   2.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   6.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.0  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.0  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 0.55
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 35  PRHHTTLFNYDRYLTEYEHDID 100
           PRH + L N +  +T++E D+D
Sbjct: 175 PRHASDLDNCNHLMTKFEPDLD 196


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.55
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
 Frame = +1

Query: 253 FPNSCRPTLTPSRFTTTLSLPLR----GLRYPATVTCLSIARSTATPRALSMPTTT 408
           F +SC P   P       S PL         PAT+T  +   +T T  A +  TTT
Sbjct: 75  FSSSCDPV--PGNLEQIGSRPLHPPASSTSLPATITTTTTTTTTTTATAAATATTT 128


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 247 LRRVGLYLSSALMSSEPFRERT 182
           L++VG   +    + E FRERT
Sbjct: 67  LKKVGFVNADTTFNEEKFRERT 88


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 182 RAFSKRFGRHQSRGKVQANTPQRFSRTPVDLP 277
           +AF+++   + S GK+ A  P  FS      P
Sbjct: 337 KAFARKKTDYSSFGKILATEPTLFSNVTPKFP 368


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -1

Query: 464  TSHASWHVVDWPVIIERARVVVGIDRARGVAVDLAMD 354
            T+   W ++D   + +R      +D  R V VD+ M+
Sbjct: 1088 TNEEMWELIDTEKLTDRLPYPWTMDNERYVKVDMYMN 1124


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 215 SRGKVQANTPQRFSRTPVDLP 277
           SR + +AN     +R P+++P
Sbjct: 162 SRAREEANVVPEGARVPIEIP 182


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +2

Query: 41  HHTTLFNYDRYLTEYEHDIDRQ 106
           HH     Y   + EY+ D++ Q
Sbjct: 165 HHMDSVEYKPEIMEYKPDVEEQ 186


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 253 KTLRRVGLYLSSALMSSEPFRERT 182
           +T+ R G+ LSSA     PF  R+
Sbjct: 254 QTISRNGVRLSSARAFITPFENRS 277


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,982
Number of Sequences: 438
Number of extensions: 3209
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)