Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0229
(476 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g54990.1 68416.m06102 AP2 domain-containing transcription fac... 30 0.93
At3g07740.2 68416.m00935 transcriptional adaptor (ADA2a) identic... 29 1.6
At3g07740.1 68416.m00936 transcriptional adaptor (ADA2a) identic... 29 1.6
At5g23910.1 68418.m02808 kinesin motor protein-related 29 2.2
At5g55540.1 68418.m06919 expressed protein 28 2.8
At1g67170.1 68414.m07641 expressed protein similar to enterophil... 28 2.8
At1g07250.1 68414.m00771 UDP-glucoronosyl/UDP-glucosyl transfera... 28 2.8
At5g23440.1 68418.m02750 ferredoxin-thioredoxin reductase, putat... 28 3.8
At4g01090.1 68417.m00147 extra-large G-protein-related contains ... 28 3.8
At3g42070.1 68416.m04317 hypothetical protein 27 6.6
At3g28345.1 68416.m03541 ABC transporter family protein similar ... 27 6.6
At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 ... 27 8.7
At5g02950.1 68418.m00238 PWWP domain-containing protein predicte... 27 8.7
At1g60930.1 68414.m06858 DNA helicase, putative strong similarit... 27 8.7
>At3g54990.1 68416.m06102 AP2 domain-containing transcription
factor, putative similar to (SP:P47927) Floral homeotic
protein APETALA2, Arabidopsis thaliana, U12546
Length = 247
Score = 29.9 bits (64), Expect = 0.93
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 62 YDRYLTEYEH-DIDRQNVQNTFRHDWQKRDAVEESQILAVLRAFSKRFGRHQSRGK 226
YDR ++ D D V + +RHD K + + + + LR S FGR S+ K
Sbjct: 161 YDRAAIKFRGLDADINFVVDDYRHDIDKMKNLNKVEFVQTLRRESASFGRGSSKYK 216
>At3g07740.2 68416.m00935 transcriptional adaptor (ADA2a) identical
to transcriptional adaptor ADA2a [Arabidopsis thaliana]
gi|13591698|gb|AAK31319
Length = 477
Score = 29.1 bits (62), Expect = 1.6
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +2
Query: 56 FNYDRYLTEYEHDIDRQNVQNTFRHDWQKRDAVEESQILAVLRAFSKRFGRHQSR 220
+N R E EHD D + + DA E Q L VLR +SKR + R
Sbjct: 204 YNLKREEFEIEHDNDAEQLLADMEFKDSDTDA-EREQKLQVLRIYSKRLDERKRR 257
>At3g07740.1 68416.m00936 transcriptional adaptor (ADA2a) identical
to transcriptional adaptor ADA2a [Arabidopsis thaliana]
gi|13591698|gb|AAK31319
Length = 548
Score = 29.1 bits (62), Expect = 1.6
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +2
Query: 56 FNYDRYLTEYEHDIDRQNVQNTFRHDWQKRDAVEESQILAVLRAFSKRFGRHQSR 220
+N R E EHD D + + DA E Q L VLR +SKR + R
Sbjct: 275 YNLKREEFEIEHDNDAEQLLADMEFKDSDTDA-EREQKLQVLRIYSKRLDERKRR 328
>At5g23910.1 68418.m02808 kinesin motor protein-related
Length = 665
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 286 SRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLAL 417
S+ T L L+G +TCL++ R T R + T T A+
Sbjct: 261 SKLTRMLKDCLKGSNITLLITCLTVLRGNVTERKTKINTATSAI 304
>At5g55540.1 68418.m06919 expressed protein
Length = 1380
Score = 28.3 bits (60), Expect = 2.8
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = -2
Query: 259 SGKTLRRVGLYLSSALMSSEPFRE----RTKDCQNLA 161
SGKT+ R G L+ L+S + FRE R D NLA
Sbjct: 1057 SGKTVLRAGFDLARNLLSDDDFREVLQRRYHDLHNLA 1093
>At1g67170.1 68414.m07641 expressed protein similar to
enterophilin-2L (GI:12718845) [Cavia porcellus]; similar
to Hyaluronan mediated motility receptor (Intracellular
hyaluronic acid binding protein) (Receptor for
hyaluronan-mediated motility) (CD168 antigen)
(Swiss-Prot:O75330) [Homo sapiens]
Length = 359
Score = 28.3 bits (60), Expect = 2.8
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = +3
Query: 129 MIGRNETPSKKARFWQSFVRSLKGSEDIRAEERYRPTRRSVFPELLSTYPYSKSIYDDPI 308
++ R E SK + Q +S + I A R + + +TY Y K Y+D +
Sbjct: 150 VVAREELMSKVHQLTQELQKSRSDVQQIPALMSELENLRQEYQQCRATYDYEKKFYNDHL 209
Query: 309 AAAERITVPGYRYLPVHREI 368
E + Y+ + RE+
Sbjct: 210 ---ESLQAMEKNYMTMAREV 226
>At1g07250.1 68414.m00771 UDP-glucoronosyl/UDP-glucosyl transferase
family protein similar to UDP-glucose
glucosyltransferase GI:453245 from [Manihot esculenta]
Length = 479
Score = 28.3 bits (60), Expect = 2.8
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -1
Query: 476 GINSTSHASWH---VVDWPVIIERARVVVGIDRARGVAVDLAMD 354
G NST + W V WP+ E+ + + G+AVDL MD
Sbjct: 369 GWNSTLESLWFGVPVATWPMYAEQQLNAFTLVKELGLAVDLRMD 412
>At5g23440.1 68418.m02750 ferredoxin-thioredoxin reductase, putative
similar to ferredoxin-thioredoxin reductase, variable
chain (FTR-V, Ferredoxin- thioredoxin reductase subunit
A, FTR-A) [Zea mays] SWISS-PROT:P80680
Length = 182
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 325 LRYPATVTCLSIARSTATPRALSMPTTTLA-LSIITGQS 438
+R P++ CLS + +TAT +++ + +A LS+ T QS
Sbjct: 15 IRRPSSHDCLSASATTATATPMALKSCIVAPLSLFTSQS 53
>At4g01090.1 68417.m00147 extra-large G-protein-related contains
weak similarity to extra-large G-protein [Arabidopsis
thaliana] gi|3201682|gb|AAC19353
Length = 714
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 351 PVHREIYG-YSPRPIYAHNYPRSLDYYRPIY 440
PVH + ++P P Y H YP + Y P++
Sbjct: 116 PVHLHGHANHNPGPSYYHQYPEPIQYPGPVH 146
>At3g42070.1 68416.m04317 hypothetical protein
Length = 230
Score = 27.1 bits (57), Expect = 6.6
Identities = 21/94 (22%), Positives = 37/94 (39%)
Frame = +3
Query: 168 FWQSFVRSLKGSEDIRAEERYRPTRRSVFPELLSTYPYSKSIYDDPIAAAERITVPGYRY 347
FW F + S+D E P R Y +++ + A +++ +
Sbjct: 97 FWSRFGNGIYDSKDAVHSEIRHPVLR---------YLVDRNVNFGSVFAHHLVSLKTKPF 147
Query: 348 LPVHREIYGYSPRPIYAHNYPRSLDYYRPIYHVP 449
H E+ G+ P P H+ PR++ + Y VP
Sbjct: 148 TGEHEEL-GFHPDPSLLHSAPRTMKHRALPYQVP 180
>At3g28345.1 68416.m03541 ABC transporter family protein similar to
P-glycoprotein [Arabidopsis thaliana] GI:3849833;
contains Pfam profiles PF00005: ABC transporter,
PF00664: ABC transporter transmembrane region
Length = 1240
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +2
Query: 398 PQLPSLSRLLQANLPRAK 451
PQLPS RLL NLP K
Sbjct: 653 PQLPSFKRLLAMNLPEWK 670
>At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5
family protein contains Pfam domain PF04153: NOT2 / NOT3
/ NOT5 family
Length = 843
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 199 VRKTSEPRKGTGQHAAAFFPNSCRPTL 279
V KT P+ G G H+A P RP+L
Sbjct: 295 VPKTPPPKNGAGLHSAPSTPAGGRPSL 321
>At5g02950.1 68418.m00238 PWWP domain-containing protein predicted
protein, Arabidopsis thaliana
Length = 632
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1
Query: 196 KVRKTSEPRKGTGQHAAAFFPNSCRPTLTPSR 291
K++KT+EP GTG NS PTL P R
Sbjct: 394 KLQKTAEPCHGTGVENEM---NSLTPTLKPCR 422
>At1g60930.1 68414.m06858 DNA helicase, putative strong similarity to
DNA Helicase recQl4B [Arabidopsis thaliana] GI:11121451;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00570:
HRDC domain
Length = 1024
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +1
Query: 325 LRYPATVTCLSIARSTATPRALSMPTTTLALS 420
+R+P+T+ ++STA P + + TTL ++
Sbjct: 928 MRFPSTIKVSKQSKSTANPAKVPLKQTTLPMA 959
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,307,005
Number of Sequences: 28952
Number of extensions: 219501
Number of successful extensions: 671
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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