Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0224
         (714 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   1.9  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    22   5.7  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    22   5.7  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   7.5  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   7.5  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   7.5  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 271 SSPYQDSPQSIGFSATISAPHMHAH 345
           ++ Y+  P S+G S   S+ H H H
Sbjct: 33  AAAYRSFPLSLGMSPYASSQHHHHH 57


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = +3

Query: 255 EKLLSFFSIPGLSSIYWILCNNQRSPHACS 344
           E+L   F+      ++W   N + S + CS
Sbjct: 96  ERLYGIFADESKCDVFWNCWNGEASRYQCS 125


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = +3

Query: 255 EKLLSFFSIPGLSSIYWILCNNQRSPHACS 344
           E+L   F+      ++W   N + S + CS
Sbjct: 96  ERLYGIFADESKCDVFWNCWNGEASRYQCS 125


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = -3

Query: 571 HHQLQV*SSQMRVSLGCHFGCFWLPNSQVLIY 476
           HH L     Q+ V  G H G    P +  + Y
Sbjct: 128 HHFLHENKYQLEVDSGYHLGASSTPTNSCMEY 159


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = -3

Query: 571 HHQLQV*SSQMRVSLGCHFGCFWLPNSQVLIY 476
           HH L     Q+ V  G H G    P +  + Y
Sbjct: 128 HHFLHENKYQLEVDSGYHLGASSTPTNSCMEY 159


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = -3

Query: 571 HHQLQV*SSQMRVSLGCHFGCFWLPNSQVLIY 476
           HH L     Q+ V  G H G    P +  + Y
Sbjct: 128 HHFLHENKYQLEVDSGYHLGASSTPTNSCMEY 159


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,785
Number of Sequences: 336
Number of extensions: 3881
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)