Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0224
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.)             122   2e-28
SB_33394| Best HMM Match : PCMT (HMM E-Value=0.53)                     88   6e-18
SB_27475| Best HMM Match : PCMT (HMM E-Value=5.5)                      78   6e-15
SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)                  70   2e-12
SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)                   62   3e-10
SB_14525| Best HMM Match : Phospholip_A2_1 (HMM E-Value=2.2)           37   0.019
SB_57659| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.100
SB_34038| Best HMM Match : Ubie_methyltran (HMM E-Value=0.0014)        33   0.23 
SB_47461| Best HMM Match : Ubie_methyltran (HMM E-Value=0.00024)       32   0.53 
SB_24641| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_41641| Best HMM Match : PT (HMM E-Value=3.1)                        31   1.2  
SB_37884| Best HMM Match : Ubie_methyltran (HMM E-Value=0.00014)       29   2.8  
SB_34419| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_1943| Best HMM Match : Vicilin_N (HMM E-Value=0.67)                 28   6.5  
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)                        28   8.6  
SB_13091| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.6  

>SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score =  122 bits (295), Expect = 2e-28
 Identities = 53/91 (58%), Positives = 71/91 (78%)
 Frame = +1

Query: 442 LGETGRVVGIEHISELVNLATKNIQNDNPSLLSSERIKLVVGDGRLGYPSEAPYSAIHVG 621
           +GE G+V GI+HI +LV  A  NI+  NP LLS ++++L+VGDGR G+ +  P+ AIHVG
Sbjct: 109 VGEKGKVYGIDHIDQLVTEAKNNIKKGNPELLSQKKVELIVGDGRKGHAAGGPFDAIHVG 168

Query: 622 AAAPTLPQALIDQLKPGGRLIVPVGPEGGEQ 714
           AAAPTLP+ L++QLKPGGR+I+PVGPE   Q
Sbjct: 169 AAAPTLPEELLEQLKPGGRMIIPVGPEARNQ 199



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 19/38 (50%), Positives = 26/38 (68%)
 Frame = +1

Query: 193 LRTNGIIKSDTVANAMLAVDRKNYCPSSPYQDSPQSIG 306
           L  NG++KSD V  A+  VDRK+Y   +P+ D+PQ IG
Sbjct: 65  LTANGVLKSDRVEAALRKVDRKHYSKLNPFMDAPQPIG 102


>SB_33394| Best HMM Match : PCMT (HMM E-Value=0.53)
          Length = 69

 Score = 88.2 bits (209), Expect = 6e-18
 Identities = 38/68 (55%), Positives = 52/68 (76%)
 Frame = +1

Query: 442 LGETGRVVGIEHISELVNLATKNIQNDNPSLLSSERIKLVVGDGRLGYPSEAPYSAIHVG 621
           +GE G+V GI+HI +LV  A  NI+  NP LLS ++++L+VGDGR G+ +  P+ AIHVG
Sbjct: 1   VGEKGKVYGIDHIDQLVTEAKNNIKKGNPELLSQKKVELIVGDGRKGHAAGGPFDAIHVG 60

Query: 622 AAAPTLPQ 645
           AAAPTLP+
Sbjct: 61  AAAPTLPE 68


>SB_27475| Best HMM Match : PCMT (HMM E-Value=5.5)
          Length = 63

 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 35/59 (59%), Positives = 46/59 (77%)
 Frame = +1

Query: 409 SGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQNDNPSLLSSERIKLVVGDGRLGY 585
           SGYLTA MA+M+G+TG+VVGI+HI ELV+++ KN+   N +LL   R+ LV GDGR GY
Sbjct: 2   SGYLTAVMAIMVGKTGKVVGIDHIQELVDMSRKNVLKGNANLLEENRLILVTGDGRKGY 60


>SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)
          Length = 283

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 51/187 (27%), Positives = 93/187 (49%), Gaps = 9/187 (4%)
 Frame = +1

Query: 157 SHGANNVDLIRNLRTNGIIKSDTVANAMLAVDRKNYCPSSPYQDSPQSIGF---SATISA 327
           S G +N +L+ NL+  G IK+  V      VDR +Y P    + + + + +   +  +SA
Sbjct: 6   SAGKDNNELVENLKEAGYIKTPKVEQVFREVDRCDYFPEGAEEHAYKDLAWKQKNVHLSA 65

Query: 328 PHMHAHALEKLKNQLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATK 507
           P +++  +E L  +L  G   L++GSG+GYL+  + +++G +G   G+E   ++V+ A  
Sbjct: 66  PCIYSEVMECL--ELEEGLSFLNLGSGTGYLSTMVGLIIGPSGTNHGVELFEDVVDFAHS 123

Query: 508 NIQN---DNPSLLSSERIK--LVVGDGRLGYPSEAPYSAIHVGAAA-PTLPQALIDQLKP 669
            +Q+   +NP+       +   VVGD          Y  ++ GAA  P     +   +K 
Sbjct: 124 KLQHFMENNPAFKGINFCEPVFVVGDCLCVDTIFRQYDRVYCGAACPPDFEDYMKSLVKV 183

Query: 670 GGRLIVP 690
            G L++P
Sbjct: 184 NGILVMP 190


>SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)
          Length = 958

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 55/172 (31%), Positives = 80/172 (46%), Gaps = 10/172 (5%)
 Frame = +1

Query: 205 GIIKSDTVANAMLAVDRKNYCPSSPYQ----DSPQSIGFSATISAPHMHAHALEKLKNQL 372
           GII S  V +A  AV R  + P   Y+    D P        +SAPHM+A  LE L   L
Sbjct: 9   GIITSKEVEDAFRAVPRGAFVPPELYEEAYYDQPLRGDPHIHMSAPHMYAGVLEAL--DL 66

Query: 373 VPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATK---NIQNDNPSLLSS 543
            PG   L+VGSG+GY +  +  ++       G+E   +LV  A +        +P L+  
Sbjct: 67  CPGLSFLNVGSGTGYFSCLVGYIIKRNSINHGVEIRKDLVEFACERRDEFLRFSPHLMRE 126

Query: 544 --ERIKLVVGDGRLGYPSEAPYSAIHVGAAAPTLPQA-LIDQLKPGGRLIVP 690
             + + L+    RL  PS+  Y  I+ G+A P    A ++   K GG  I+P
Sbjct: 127 ICQPVFLLGNCFRLD-PSDRKYDRIYCGSACPPSKVAFILSMTKIGGFAIIP 177


>SB_14525| Best HMM Match : Phospholip_A2_1 (HMM E-Value=2.2)
          Length = 462

 Score = 36.7 bits (81), Expect = 0.019
 Identities = 19/45 (42%), Positives = 29/45 (64%)
 Frame = +1

Query: 340 AHALEKLKNQLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIE 474
           AH + ++ +Q V  EK LD+GSG GYL+  +A+  G T  V G++
Sbjct: 135 AHVVNQIASQ-VKAEKVLDLGSGKGYLSQALALDYGLT--VTGVD 176


>SB_57659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 34.3 bits (75), Expect = 0.100
 Identities = 15/47 (31%), Positives = 29/47 (61%)
 Frame = +1

Query: 367 QLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATK 507
           + + G + LD+GSGSG     ++ ++GE G + G++   E +++A K
Sbjct: 11  ECLDGCRILDLGSGSGRDCYVLSKLVGEEGFITGVDMTPEQLDIANK 57


>SB_34038| Best HMM Match : Ubie_methyltran (HMM E-Value=0.0014)
          Length = 267

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +1

Query: 385 KALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATK 507
           + LD+G GSG     ++ ++GE G V G++   E V++A K
Sbjct: 17  RVLDLGCGSGRDCFILSKLVGEKGFVTGVDMTPEQVDIANK 57


>SB_47461| Best HMM Match : Ubie_methyltran (HMM E-Value=0.00024)
          Length = 307

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 6/118 (5%)
 Frame = +1

Query: 352 EKLKNQLVPG------EKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNI 513
           +K+ NQ+ P       +  LD+G G+G +T  MA        ++GI+     V LA  N 
Sbjct: 84  KKVANQIFPSLPFATAKFVLDLGCGTGDVTGAMAANFSNDASIIGIDPDKYRVELAKSNH 143

Query: 514 QNDNPSLLSSERIKLVVGDGRLGYPSEAPYSAIHVGAAAPTLPQALIDQLKPGGRLIV 687
            ++   L  S      +G+    Y        +H         + + D LKPGG L++
Sbjct: 144 CSNVQFLQGSAESFPHLGEEY--YDLVFSNFVLHWIPQRTKAFRDIYDSLKPGGMLVM 199


>SB_24641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1120

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +1

Query: 502  TKNIQNDNPSLLSSERIKLVVGDGRLGYPSEAPYSAIHVGAAAPT-LPQALIDQLKPGGR 678
            TK  Q+ N     ++R +  VG+     P++ P +   VG A PT LPQA + + KP  R
Sbjct: 1021 TKRPQDPNGQAEPTKRPQAPVGEAE---PTKRPQAP--VGEAEPTKLPQAPVGEAKPTKR 1075

Query: 679  LIVPVG 696
               PVG
Sbjct: 1076 PQSPVG 1081


>SB_41641| Best HMM Match : PT (HMM E-Value=3.1)
          Length = 873

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +1

Query: 502 TKNIQNDNPSLLSSERIKLVVGDGRLGYPSEAPYSAIHVGAAAPT-LPQALIDQLKPGGR 678
           TK  Q+ N     ++R +  VG+     P++ P +   VG A PT LPQA + + KP  R
Sbjct: 545 TKRPQDPNGQAEPTKRPQAPVGEAE---PTKRPQAP--VGEAEPTKLPQAPVGEAKPTKR 599

Query: 679 LIVPVG 696
              PVG
Sbjct: 600 PQSPVG 605


>SB_37884| Best HMM Match : Ubie_methyltran (HMM E-Value=0.00014)
          Length = 399

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 6/118 (5%)
 Frame = +1

Query: 352 EKLKNQLVPG------EKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNI 513
           +K+ NQ+ P       +  LD+G G+G +T  MA        ++GI+     V LA    
Sbjct: 132 KKVANQIFPSLPFATAKFVLDLGCGTGDVTGAMAANFSNDASIIGIDPDKYRVELAKSKY 191

Query: 514 QNDNPSLLSSERIKLVVGDGRLGYPSEAPYSAIHVGAAAPTLPQALIDQLKPGGRLIV 687
            + +         +     G   Y        +H         + + D LKPGG L++
Sbjct: 192 DHCSNVQFLQGSAESFPHLGEEYYDLVFSNFVLHWIPQRTKAFRDIYDSLKPGGMLVM 249


>SB_34419| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 312 CNNQRSPHACSCIRKVKKPASTRRKSFRCWFGVWLPHCL 428
           CNN +  + C+C+  +  P S  + S   W G+   H L
Sbjct: 171 CNNTKGGYNCTCVSAMYYPVSPYKCSGEFWMGLEKIHQL 209


>SB_1943| Best HMM Match : Vicilin_N (HMM E-Value=0.67)
          Length = 695

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +1

Query: 271 SSPYQDSPQ-SIGFSATISAPHMHAHALEKLKNQLVPGEKALDVGSGSGYLTACMAMMLG 447
           +S Y++    S G  A    PH      ++        ++  DVG+G G+L+  MAM  G
Sbjct: 107 TSQYEEEESASKGQEANPHPPHGRKRKRKRPTTAATTTKQGPDVGAGLGHLSRVMAMEYG 166

Query: 448 ETGRVVGIE 474
              RVV +E
Sbjct: 167 L--RVVSLE 173


>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1498

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 306 ILCNNQRSPHAC-SCIRKVKKP 368
           +LC+NQ  P+AC  C R  K+P
Sbjct: 582 MLCHNQERPYACDDCDRAFKRP 603


>SB_13091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +1

Query: 379 GEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQNDNPSL 534
           G   +++G+G G  T  +   L E   ++ +++   +  +  KN++ DNP+L
Sbjct: 17  GGDVVEIGAGPGNYTKFL--QLPERSFLIVVDYHPHMEKIFPKNMETDNPNL 66


>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 370 LVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISE 486
           L+  +K +++G  +GY T  MAM L   G+VV  +   E
Sbjct: 246 LLNPQKCIEIGVFTGYNTINMAMCLPSGGKVVACDVTDE 284


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,265,855
Number of Sequences: 59808
Number of extensions: 463372
Number of successful extensions: 1176
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)