Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0222
         (580 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   1.9  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   1.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.3  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    21   5.7  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   5.7  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -2

Query: 486 LTVGRDARLSI*NEAGSIKYLNIAVFTKSPVKLLTIT--RIYR 364
           +  G+D    + N  G  +  N    T +P+++ TIT  R YR
Sbjct: 303 VNTGQDPESLLINGKGQFRDPNTGFMTNTPLEVFTITPGRRYR 345


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -2

Query: 486 LTVGRDARLSI*NEAGSIKYLNIAVFTKSPVKLLTIT--RIYR 364
           +  G+D    + N  G  +  N    T +P+++ TIT  R YR
Sbjct: 303 VNTGQDPESLLINGKGQFRDPNTGFMTNTPLEVFTITPGRRYR 345


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 306 QLHWKLPFDTGFKITR 259
           QL W  PFD    ITR
Sbjct: 913 QLSWVAPFDGNSPITR 928


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 439 VHKIFEHSSFHEVSREIINYYQDLSLKY 356
           VHK+F+H   H       N++ +L  K+
Sbjct: 81  VHKVFQHLMIHRP-----NWWHELETKF 103


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = -1

Query: 217 NKKIDDAYFVKGSVLSASFLTFSIALELTKIFIELERLPTFAAR 86
           ++ + + YF   SV +    TF+  ++L +I ++  R+ +   R
Sbjct: 91  HRDLTEVYFSFNSVRNVQQHTFADLIQLEQIHLDDNRIESLERR 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,958
Number of Sequences: 336
Number of extensions: 2389
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)