Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0222
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    30   0.28 
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    26   4.6  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    25   6.1  
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    25   6.1  
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi...    25   8.0  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.0  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.0  

>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 6   RNRHEEYFYFLDSVKVTSNLYAVGTAPLAANVGKRSNSMKIL--VNSNAIEKVKKLAL 173
           +N     FY+L SVK    L   GT PL  NV +  N ++ L  +  NA E  K+ ++
Sbjct: 695 KNDQSSLFYYLSSVKSDFKLLLTGT-PLQNNVRELFNLLQFLNPMKINAAELEKRYSI 751


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = -2

Query: 549 YDIENVQKLALSTMSATPTGFLTVGRDARLSI*NEAGSIKYLNIAVFT 406
           YD E       ST+   P G  T    +R +    +   + +N A+FT
Sbjct: 337 YDFETFSNSYSSTIIDFPLGIFTTNASSRDNFLKHSSLFQVMNTAIFT 384


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 30  YFLDSVKVTSNLYAVGTAPLAANVGKRSNSMKILVNSNAIEKVK 161
           Y+LDS+K   NLY      L+ ++   S   K+LV  +A + VK
Sbjct: 561 YYLDSLKFFLNLYGHKLPVLSMDI---SYDSKLLVTCSADKNVK 601


>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -1

Query: 490 LPYSRTGRPPKYLK*SWVHKIFEHSSFHEVSREIINYYQDLS 365
           LP+S+  R P Y   + V     H+ F  +S  ++   + LS
Sbjct: 190 LPFSKGFRSPSYKGHAPVRPFSSHTIFFSISNAVVKNIKQLS 231


>SPBC1539.01c |||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 196 YFVKGSVLSASFLTFSIALELTKIFI 119
           YF KG V + +F   SI  +LTK F+
Sbjct: 177 YFQKGGVEAMNFCKKSIISDLTKDFV 202


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 438 SIKYLNIAVFTKSPVKLLTITRIYRSNTQLELSQTPLV 325
           ++K L I +FTK P  + +IT++       +    PLV
Sbjct: 379 NMKPLLIKLFTKLPAHITSITKLQSLENSTKNDNVPLV 416


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +3

Query: 21  EYFYFLDSVKVTSNLYAVGTAPLAANVGKRSNSMKILVNSNAIEKVKKLALSTLPLT 191
           EY     +  V+S   +  T  LAAN G  SNS+  L N  +   V   A +T  +T
Sbjct: 811 EYNTSFHAPTVSSTTSSSSTTSLAANKGVNSNSITSL-NLESTSSVTSTAYTTDSVT 866


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,243,598
Number of Sequences: 5004
Number of extensions: 42081
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)