Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0222
         (580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0140 + 21090686-21091645,21092142-21092221,21092705-210929...    29   3.5  
08_01_0963 - 9661699-9661760,9662095-9662818,9662860-9663265,966...    28   6.2  
01_07_0187 + 41862342-41862622,41862730-41862912,41863236-418632...    28   6.2  

>09_06_0140 +
           21090686-21091645,21092142-21092221,21092705-21092906,
           21093052-21093327,21093414-21093482,21093638-21093785,
           21094080-21094228,21094897-21095061,21095623-21095732,
           21095868-21095946,21095947-21096240
          Length = 843

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +1

Query: 409 ENCYVQIFYGPSFISNT*AGVPSDCKEAGGGRAHC 513
           EN +VQ+F   S  S +  G PSDCKEA      C
Sbjct: 501 ENWHVQVFR--SIDSGSLKGFPSDCKEASKQNLIC 533


>08_01_0963 -
           9661699-9661760,9662095-9662818,9662860-9663265,
           9663488-9665037
          Length = 913

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 208 FFCFFPNLSERH*VAIPSRYFKTGVKWKFPM 300
           FFC  PN+  RH +A+  R F   ++  F M
Sbjct: 71  FFCCLPNIHRRHEIAVRIRNFNFELEKIFKM 101


>01_07_0187 +
           41862342-41862622,41862730-41862912,41863236-41863299,
           41863547-41863756,41863850-41864035,41864180-41864478,
           41864584-41864731,41864798-41864863,41864945-41865217,
           41865523-41865741,41865864-41866013
          Length = 692

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 105 KRSNSMKILVNSNAIEKVKKLALSTLPLT 191
           KRSNSM++   SN      +LA+  LP T
Sbjct: 123 KRSNSMELFTVSNVARGSNRLAILQLPFT 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,134,395
Number of Sequences: 37544
Number of extensions: 258863
Number of successful extensions: 563
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)