Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0222
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    33   0.11 
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    33   0.11 
Z77652-8|CAB01114.1|  314|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z77652-3|CAB01115.1|  349|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.      27   7.3  
AC024818-2|AAF60781.1|  302|Caenorhabditis elegans Temporarily a...    27   9.6  

>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
           protein.
          Length = 1829

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 17/65 (26%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
 Frame = -1

Query: 538 ERSKTRTKHNERDPHRLP--YSRTGRPPKYLK*SWVHKIFEHSSFHEVSREIINYYQDLS 365
           E S T   H++ DP++L   + + G  P++++   +H+I  H S+ +  ++ +  +++LS
Sbjct: 459 EESVTSRHHSDNDPYKLRERFYQYGIKPEWMQ---IHRIINHQSYAKSQQDYLVKWKELS 515

Query: 364 LKYAT 350
              AT
Sbjct: 516 YDQAT 520


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 17/65 (26%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
 Frame = -1

Query: 538 ERSKTRTKHNERDPHRLP--YSRTGRPPKYLK*SWVHKIFEHSSFHEVSREIINYYQDLS 365
           E S T   H++ DP++L   + + G  P++++   +H+I  H S+ +  ++ +  +++LS
Sbjct: 459 EESVTSRHHSDNDPYKLRERFYQYGIKPEWMQ---IHRIINHQSYAKSQQDYLVKWKELS 515

Query: 364 LKYAT 350
              AT
Sbjct: 516 YDQAT 520


>Z77652-8|CAB01114.1|  314|Caenorhabditis elegans Hypothetical
           protein C06B3.4 protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 418 SSFHEVSREIINYYQDLSLKYATRTVTNPTCSPGVSLSASL-ETSI 284
           S      +EI+  + D+ +++AT   TNP+ S    L + L E SI
Sbjct: 82  SKLEHTKKEILEVHPDIEVRFATFDFTNPSVSDYEKLLSKLNEVSI 127


>Z77652-3|CAB01115.1|  349|Caenorhabditis elegans Hypothetical
           protein C06B3.5 protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 418 SSFHEVSREIINYYQDLSLKYATRTVTNPTCSPGVSLSASL-ETSI 284
           S   +  +EI+  Y ++ +++AT   TNP+ S    L + L E SI
Sbjct: 82  SKLEQTKKEIMEKYSNVEVRFATFDFTNPSISDYKKLLSQLNEVSI 127


>Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical
           protein F22B5.7 protein.
          Length = 1415

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +3

Query: 36  LDSVKVTSNLYAVGTAPLAANVGKRSNSMKILVNSNAIEKVKKLALSTLP 185
           +D+V  T+NL AVG   LAA +GK + S+K   +        KL   T+P
Sbjct: 409 IDAVVATTNLEAVGEIVLAA-LGKPNPSIKTQTDLFLQRCFMKLNSQTMP 457


>AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.
          Length = 1415

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +3

Query: 36  LDSVKVTSNLYAVGTAPLAANVGKRSNSMKILVNSNAIEKVKKLALSTLP 185
           +D+V  T+NL AVG   LAA +GK + S+K   +        KL   T+P
Sbjct: 409 IDAVVATTNLEAVGEIVLAA-LGKPNPSIKTQTDLFLQRCFMKLNSQTMP 457


>AC024818-2|AAF60781.1|  302|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 262 protein.
          Length = 302

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 453 KYLGGRPVRL*GSRWGSRSLCLVR 524
           KY+G RP++L  S W  R++ +++
Sbjct: 267 KYVGNRPIKLRKSAWKERNIDVIK 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,338,024
Number of Sequences: 27780
Number of extensions: 235229
Number of successful extensions: 565
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)