Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0222
         (580 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    24   1.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   3.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   3.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.8  

>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 102 GKRSNSMKILVNSNAIE 152
           GKRS S++ L N NAI+
Sbjct: 33  GKRSTSLEELANRNAIQ 49


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = -2

Query: 390 LLTITRIYRSNTQLELSQTPLVARECH--CQ--LHWKLPFDT 277
           LLT+T ++  +   E      V   CH  C   LHW+LP ++
Sbjct: 268 LLTLTVLWLDSRSTERMIAASVNLICHILCMSDLHWQLPHNS 309


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 306 QLHWKLPFDTGFKITRRYSN 247
           +  W  P ++GF  T  YSN
Sbjct: 286 EFDWNKPINSGFYSTIMYSN 305


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 306 QLHWKLPFDTGFKITRRYSN 247
           +  W  P ++GF  T  YSN
Sbjct: 286 EFDWNKPINSGFYSTIMYSN 305


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 318 PGLQVGFVTVLVAYLSDKS 374
           P + + F+TVLV YL   S
Sbjct: 250 PCMGISFLTVLVFYLPSDS 268


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,437
Number of Sequences: 438
Number of extensions: 3175
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)