Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0219
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    27   1.8  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   3.2  
SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subun...    25   7.3  

>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 19/53 (35%), Positives = 23/53 (43%)
 Frame = -2

Query: 179 HAVFVSSCKKR*EQSIR*RFITSSTQPLRSFQKQIDYSS*RELPVPLSLVPNS 21
           H  F S      E S+    I S    L++FQ Q DYSS  + P    L  NS
Sbjct: 41  HTSFSSFAPFENEVSLNQAVIPSPPSHLQNFQDQFDYSSVLKTPFNPLLEANS 93


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 292 LPPLNVPLDLFEYVIFLHLLFLKRIAGSFESYNLFVIV 179
           LP   + + +F  V++  L  LKR AG F +Y LF+ +
Sbjct: 624 LPFRFINISVFSIVLYF-LTNLKRTAGGFWTYFLFLFI 660


>SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subunit
           Rpc31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -1

Query: 450 VESCSRASHSQVSPSRDVPKQKPIISGEIITPRXRHNXNIIHLKASAFAV 301
           +E  + ++ +++ P RD+P Q+ I   E++  R         L  SAF +
Sbjct: 20  LEFNANSTPTKLYPDRDIPLQRSIRPEELLELRFYKEIRTSFLDESAFYI 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,832,719
Number of Sequences: 5004
Number of extensions: 33580
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)