Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0219
         (459 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF130443-1|AAD28468.1|  956|Caenorhabditis elegans EAG K+ channe...    27   8.7  
AF106577-5|AAC78192.2|  353|Caenorhabditis elegans Hypothetical ...    27   8.7  
AF036695-1|AAB88348.2|  956|Caenorhabditis elegans Egg laying de...    27   8.7  

>AF130443-1|AAD28468.1|  956|Caenorhabditis elegans EAG K+ channel
           EGL-2 protein.
          Length = 956

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 310 LCRFTSLPPLNVPLDLFEYVIFLHLLFLKRIAGSFESYN 194
           LC+F  + PL  PLD         +L + RIA S + +N
Sbjct: 127 LCQFKDITPLKQPLDDENNKGLSRILQIARIAKSKQQFN 165


>AF106577-5|AAC78192.2|  353|Caenorhabditis elegans Hypothetical
           protein F46F5.14 protein.
          Length = 353

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -3

Query: 262 FEYVIFLHLLFLKRIAGSFESYNLFVIVMQCSCHPAKNAKSKALDSVSLHRALNHY 95
           F YV+   +L L   AGS E      IVM  +    +N    A D++  +  +++Y
Sbjct: 22  FIYVVVFSILDLNSEAGSSELPPKIAIVMVLTGDTKENNYQTAFDTIRCYAKIHNY 77


>AF036695-1|AAB88348.2|  956|Caenorhabditis elegans Egg laying
           defective protein 2 protein.
          Length = 956

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 310 LCRFTSLPPLNVPLDLFEYVIFLHLLFLKRIAGSFESYN 194
           LC+F  + PL  PLD         +L + RIA S + +N
Sbjct: 127 LCQFKDITPLKQPLDDENNKGLSRILQIARIAKSKQQFN 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,422,884
Number of Sequences: 27780
Number of extensions: 197908
Number of successful extensions: 468
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)