Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0218
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    77   8e-16
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   3.2  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    25   5.6  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    24   9.8  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 77.4 bits (182), Expect = 8e-16
 Identities = 41/103 (39%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
 Frame = +3

Query: 90  ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 263
           EL  PGS  L G+ Q+YN  ++AH                  N LVPL++GAPD+A+PR+
Sbjct: 45  ELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDVAYPRV 104

Query: 264 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRG 392
           NN  F              + E G G G TVYPPLSS  +H G
Sbjct: 105 NNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSG 147


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 281 TPTPLPYIINFKKNCRKWCRNRMNS 355
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 102 DFLIQLELKVLKMFQL 55
           DFLIQL+ KV   FQL
Sbjct: 609 DFLIQLKSKVFNRFQL 624


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 337 APFSTILLEINNIRE 293
           APFST   EINNI +
Sbjct: 55  APFSTTYSEINNIHD 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,296,937
Number of Sequences: 5004
Number of extensions: 20087
Number of successful extensions: 39
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)