Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0218
         (395 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0669 + 19335661-19335917,19336153-19336279,19336393-193367...    27   7.2  
03_03_0253 + 15871870-15871949,15872101-15872170,15872666-158727...    26   9.6  

>09_04_0669 +
           19335661-19335917,19336153-19336279,19336393-19336771,
           19336857-19336915,19337413-19337449,19337629-19337996,
           19338493-19338543
          Length = 425

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 121 SPINDPGFPNSARIKSLKDVPIIPDQIPKIKYNVPLVP 8
           SP N   +PNS   +       IP   P   + VP++P
Sbjct: 191 SPTNGAYYPNSTACQGSSSFGSIPYSAPFETFGVPIIP 228


>03_03_0253 +
           15871870-15871949,15872101-15872170,15872666-15872701,
           15873576-15873630,15873859-15873941,15874019-15874850,
           15875184-15875286,15875359-15875498,15875649-15875880,
           15876203-15876338,15877208-15877302,15877381-15877504,
           15877690-15877812
          Length = 702

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 265 FIRGNAISGAPSIRGTNQFPNPP 197
           F+RG+ I  AP ++G   F +PP
Sbjct: 576 FVRGDFIHVAPRLKGETVFMSPP 598


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,659,743
Number of Sequences: 37544
Number of extensions: 138688
Number of successful extensions: 245
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)