Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0216
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe... 120 3e-28
SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyce... 40 3e-04
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 35 0.010
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 29 0.63
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 29 0.83
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 27 1.9
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo... 26 4.4
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 26 5.8
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 25 7.7
>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 182
Score = 120 bits (288), Expect = 3e-28
Identities = 56/151 (37%), Positives = 93/151 (61%), Gaps = 2/151 (1%)
Frame = +1
Query: 43 YKDNIEQSLNDKSKPWTKYFEL--AEQKVGVNRLYIFLGLVAFTGLYLVFGFGAELICNS 216
++ ++Q++ D + +L E+ GV++LY+FL L+L +G L+ N
Sbjct: 3 FQVRVKQNMQDLDNRLAAFPQLNSLEKNFGVSKLYVFLTAAGIYALFLFLNWGGFLLTNL 62
Query: 217 IGFVYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFV 396
+ F PA+ S+ A+E+ K DDT+WLTY++V + +++EY+S I+ + P+YWLLK IF+
Sbjct: 63 LAFAMPAFFSINAIETTNKADDTQWLTYYLVTSFLNVIEYWSQLILYYVPVYWLLKAIFL 122
Query: 397 ICCYLPTEYNGSLVIYYRIIRPYYQKHHGRI 489
I LP ++NG+ +IY +IRPY H RI
Sbjct: 123 IWLALP-KFNGATIIYRHLIRPYITPHVIRI 152
>SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/75 (25%), Positives = 32/75 (42%)
Frame = +1
Query: 271 KDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVICCYLPTEYNGSLVIYYR 450
+++ + + YW VY C + E + W P Y K +F + P G+ IY
Sbjct: 97 EEERRRLMAYWCVYGCVTAAESILGRFLSWVPFYSTSKIVFWLWLLNP-RTQGAAFIYAS 155
Query: 451 IIRPYYQKHHGRIDD 495
I P+ H I++
Sbjct: 156 YISPFLSDHKAAINN 170
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 35.1 bits (77), Expect = 0.010
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Frame = +1
Query: 172 LYLVFGFGAELICNSIGFVYPAYMSMKALESPQKDDDTKWLTYW--VVYACFSIVEYFSD 345
L LVFG LI IGF+ Y + +E PQ W T + +++ C I++
Sbjct: 654 LILVFG----LIYFIIGFLVYKYELIYQMEHPQHSTGELWSTIFLRMIFGCV-IMQLTMM 708
Query: 346 FIVGWFPLYWLLKCIFVICCY-LPTEYNGSLVI--YYRIIRPYYQKHH 480
++ YWL IF + C+ + + YN S +I + + YY + H
Sbjct: 709 GLMSLRKAYWLSTVIFPLLCFTVISAYNFSTMIRSSMQFVSLYYIRTH 756
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 29.1 bits (62), Expect = 0.63
Identities = 23/94 (24%), Positives = 41/94 (43%)
Frame = -2
Query: 356 PTMKSEKYSTIEKQAYTTQYVSHFVSSSFCGDSRAFIDMYAGYTKPIELHINSAPKPNTK 177
P+ K++ YS +++ TT + F + + F+ Y +L + SA N
Sbjct: 122 PSYKAKTYSLVKEYKGTT-FFDGFDFMNITDPTHGFVQ-YLDRNSSAKLGLISANSSNV- 178
Query: 176 YKPVNATKPKKMYNLFTPTFCSASSKYFVHGLLL 75
+ A K Y+ P+ S++YF HGL +
Sbjct: 179 ---IMAADSKHNYSSGRPSIRLQSTQYFEHGLFI 209
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 28.7 bits (61), Expect = 0.83
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 197 APKPNTKYKPVNATKPKKMYNLFTPTFCSASS 102
A K +KYKP+N KP + + PT S S+
Sbjct: 510 ATKSASKYKPINYPKPDNVLSFDIPTSVSRSA 541
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +1
Query: 121 VGVNRLYIFLGLVAFTGLYLVFGFGAELICNSIGFVYPAYMSMKALESPQKDDDTKWLTY 300
+G+ R +F L ++ + G ++ ++P+ +S AL D+D
Sbjct: 207 IGIGRAILF-NLCSYLSSFGWSGLALPILVYPPTLIWPSVLSSCALFKIFHDNDNTKACN 265
Query: 301 WVVYAC-FSIVEYFSDFIVGWFP 366
W + + + + + FI WFP
Sbjct: 266 WTISRLRYFFIVFVASFIWYWFP 288
>SPAC15A10.06 |||CPA1 sodium ion/proton
antiporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 64 SLNDKSKPWTKYFELAEQKVGVNRLYIFLGLVAFTGLYLVF 186
+++ K+K TKY ++ N ++I+LG+ FT + LV+
Sbjct: 307 NMSYKAKLSTKYVFRVLAQLSENFIFIYLGMSLFTQVDLVY 347
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 316 CFSIVEYFSDFIVGWFPLYWLLKC 387
C ++EYF F + LY LL C
Sbjct: 337 CLRVIEYFRRFGYNDYQLYLLLSC 360
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 28 SKLQEYKDNIEQSLNDKSKPWTKYFE 105
+++ E D I++ LNDK K W F+
Sbjct: 53 NEMLEVMDIIDRRLNDKGKNWRHVFK 78
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,548
Number of Sequences: 5004
Number of extensions: 68185
Number of successful extensions: 200
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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