Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0216
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0392 + 17131839-17131943,17134182-17134258,17134385-171344... 81 8e-16
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 77 1e-14
11_06_0315 + 22318155-22318210,22319743-22319769,22319868-223199... 77 2e-14
07_03_0945 - 22791754-22791863,22792295-22792367,22792457-227925... 75 7e-14
03_02_0377 - 7898075-7898605,7900782-7901000,7901079-7901142,790... 72 5e-13
10_02_0078 - 4992019-4992594,4993156-4993248,4995984-4996202,499... 68 6e-12
08_02_0954 + 22989780-22989883,22989980-22990160,22990218-22990316 66 3e-11
02_05_0743 + 31425827-31425888,31426733-31426759,31426840-314269... 65 4e-11
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113... 64 7e-11
06_01_0865 - 6571056-6571190,6571737-6571977,6572279-6572401,657... 63 2e-10
09_06_0070 - 20670387-20670473,20672418-20672645,20673388-206735... 60 2e-09
09_04_0341 + 16820890-16820993,16821082-16821269,16821412-16821416 58 5e-09
11_01_0354 + 2665570-2665601,2665796-2665894,2667158-2667202,266... 48 9e-06
12_01_0375 + 2930807-2930838,2930936-2930999,2931127-2931333,293... 31 0.64
08_02_0501 + 17836948-17837373,17837857-17839184,17839270-178393... 29 2.6
01_05_0148 + 18609853-18610058,18610347-18612669 29 4.5
09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801... 28 6.0
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948... 28 6.0
07_03_0636 + 20168180-20168462,20168961-20170303,20170401-201706... 28 7.9
01_05_0011 + 17133501-17133738,17135335-17135607,17145224-171453... 28 7.9
01_03_0306 + 14875755-14876822 28 7.9
>11_04_0392 +
17131839-17131943,17134182-17134258,17134385-17134411,
17134512-17134634,17134738-17134981,17135081-17135098
Length = 197
Score = 81.0 bits (191), Expect = 8e-16
Identities = 32/88 (36%), Positives = 56/88 (63%)
Frame = +1
Query: 214 SIGFVYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIF 393
++ +YP Y S++A+ESP K DD +WL YW++Y+ ++VE + ++ W P+++ LK +F
Sbjct: 63 TVMLLYPLYASVQAMESPSKLDDEQWLAYWILYSFITLVEMLLESLIYWIPIWYELKLLF 122
Query: 394 VICCYLPTEYNGSLVIYYRIIRPYYQKH 477
+ LP + G+ IY R +R +KH
Sbjct: 123 IAWLALP-NFRGAAFIYNRFVREQLRKH 149
>01_06_0575 - 30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 77.4 bits (182), Expect = 1e-14
Identities = 36/91 (39%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Frame = +1
Query: 202 LICNSIGFVYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLL 381
L+ I +YP Y SM+A+ESP DD +WLTYWV+Y+ ++ E ++ WFPL+ +
Sbjct: 897 LVGPGIMLLYPLYASMRAIESPSTLDDQQWLTYWVLYSLITLFELSCWKVLQWFPLWPYM 956
Query: 382 KCIFVICCYLPTE-YNGSLVIYYRIIRPYYQ 471
K +F CC+L +NG+ IY +R Y++
Sbjct: 957 KLLF--CCWLVLPIFNGAAYIYETHVRRYFK 985
>11_06_0315 +
22318155-22318210,22319743-22319769,22319868-22319990,
22320867-22321110,22321487-22321981
Length = 314
Score = 76.6 bits (180), Expect = 2e-14
Identities = 32/87 (36%), Positives = 50/87 (57%)
Frame = +1
Query: 217 IGFVYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFV 396
+ YP Y S+KA+E+ DD +WLTYWV+Y+ ++ E I+ W P + +K IF+
Sbjct: 22 VALAYPLYASVKAIETKSPVDDQQWLTYWVMYSLITLFELTFASIIQWLPFWPSMKLIFI 81
Query: 397 ICCYLPTEYNGSLVIYYRIIRPYYQKH 477
LP +NG+ +Y +RP + KH
Sbjct: 82 CWLVLP-YFNGAAFVYQNYVRPMFVKH 107
>07_03_0945 -
22791754-22791863,22792295-22792367,22792457-22792552,
22793268-22793331,22793957-22794008,22794525-22794622,
22795108-22795166,22795981-22796013
Length = 194
Score = 74.5 bits (175), Expect = 7e-14
Identities = 32/97 (32%), Positives = 54/97 (55%)
Frame = +1
Query: 214 SIGFVYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIF 393
+IG P Y + +A+E + + +WL YW Y FSI E F+D I+ P Y+ +K
Sbjct: 33 AIGVGLPVYSTFRAIEKKDQKEKERWLLYWAAYGSFSIAEIFADQILSSVPFYYHVKFAI 92
Query: 394 VICCYLPTEYNGSLVIYYRIIRPYYQKHHGRIDDMAN 504
++ P+ +G+ +Y R +RP++ KH +ID + N
Sbjct: 93 LVWLQFPSN-SGAKHVYRRYMRPFFLKHQAKIDRILN 128
>03_02_0377 -
7898075-7898605,7900782-7901000,7901079-7901142,
7901226-7901282,7901373-7901471,7901744-7901793,
7902378-7902422,7902967-7903062
Length = 386
Score = 71.7 bits (168), Expect = 5e-13
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Frame = +1
Query: 163 FTGLYLVFGFGAELICNSIGFVYPAYMSMKALE--SPQKDDDTKWLTYWVVYACFSIVEY 336
F + L+ + + + G+ YPAY K +E P+ + W YW++ A +++E
Sbjct: 49 FYNVSLIMSRRSRCVLLAFGYAYPAYECYKTVELNKPEIEQLIFWCQYWILVALMTVMER 108
Query: 337 FSDFIVGWFPLYWLLKCIFVICCYLPTEYNGSLVIYYRIIRPYYQKHHGRID 492
F DF + W P Y K +F I + P + G+ IY RPY +H ID
Sbjct: 109 FGDFTISWLPFYSEAKLMFFIYLWYP-KTKGTTYIYGTFFRPYISQHENEID 159
>10_02_0078 -
4992019-4992594,4993156-4993248,4995984-4996202,
4996282-4996345,4996429-4996485,4996573-4996671,
4997296-4997327
Length = 379
Score = 68.1 bits (159), Expect = 6e-12
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Frame = +1
Query: 190 FGAELICNSIGFVYPAYMSMKALE--SPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWF 363
F + ++ + G+ YPAY K +E P+ + W YW++ A +++E F DF + W
Sbjct: 5 FLSRVLLLAFGYAYPAYECYKTVELNKPEIEKLIFWCQYWILVALLTVLERFGDFAISWL 64
Query: 364 PLYWLLKCIFVICCYLPTEYNGSLVIYYRIIRPYYQKHHGRID 492
PLY K +F I + P G+ +Y RPY ++ ID
Sbjct: 65 PLYSEAKLMFFIYLWCP-RTKGTSYVYETFFRPYISQYENDID 106
>08_02_0954 + 22989780-22989883,22989980-22990160,22990218-22990316
Length = 127
Score = 65.7 bits (153), Expect = 3e-11
Identities = 25/77 (32%), Positives = 50/77 (64%)
Frame = +1
Query: 256 LESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVICCYLPTEYNGSL 435
+ESP K DD +WL YW++Y+ +++E ++ ++ W P+++ +K +FV LP ++ G+
Sbjct: 1 MESPTKVDDEQWLAYWILYSFITLLEMVAEPVLYWIPVWYPVKVLFVAWLVLP-QFKGAS 59
Query: 436 VIYYRIIRPYYQKHHGR 486
IY +++R +K+ R
Sbjct: 60 FIYKKLVREQLRKYRAR 76
>02_05_0743 +
31425827-31425888,31426733-31426759,31426840-31426962,
31427252-31427492,31427655-31427780
Length = 192
Score = 65.3 bits (152), Expect = 4e-11
Identities = 27/82 (32%), Positives = 45/82 (54%)
Frame = +1
Query: 217 IGFVYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFV 396
+ YP Y S++A+E+ DD +WLTYWV+Y+ ++ E ++ W PL W +F
Sbjct: 24 VSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITLFELTFSPVLEWLPL-WSYAKLFF 82
Query: 397 ICCYLPTEYNGSLVIYYRIIRP 462
C + +NG+ +Y +RP
Sbjct: 83 NCWLVLPYFNGAAHVYEHFVRP 104
>02_01_0163 +
1135592-1135623,1135718-1135816,1135904-1135960,
1136053-1136116,1136174-1136392,1138562-1138945
Length = 284
Score = 64.5 bits (150), Expect = 7e-11
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Frame = +1
Query: 217 IGFVYPAYMSMKALE--SPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCI 390
+G+ YPAY K +E P+ + W YW++ A ++ E D V W P+Y K
Sbjct: 14 LGYAYPAYDCYKTVELNRPEVEQLRFWCQYWILLAVLTVFERVGDNFVSWLPMYSEAKLA 73
Query: 391 FVICCYLP--TEYNGSLVIYYRIIRPYYQKHHGRID 492
F++ + P + G+ +Y +PY KH ID
Sbjct: 74 FIVYLWYPKTQHFQGTSYVYESFFKPYIGKHEAEID 109
>06_01_0865 -
6571056-6571190,6571737-6571977,6572279-6572401,
6572501-6572527,6573954-6574009
Length = 193
Score = 63.3 bits (147), Expect = 2e-10
Identities = 25/84 (29%), Positives = 46/84 (54%)
Frame = +1
Query: 217 IGFVYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFV 396
+ YP Y S++A+E+ DD +WLTYWV+Y+ ++ E ++ W P +W +F
Sbjct: 22 VSLAYPLYASVRAIETKSPVDDQQWLTYWVLYSFITLFELTFAPVIEWLP-FWSYAKLFF 80
Query: 397 ICCYLPTEYNGSLVIYYRIIRPYY 468
C + ++G+ +Y +RP +
Sbjct: 81 NCWLVLPCFHGAAYVYDHFVRPMF 104
>09_06_0070 -
20670387-20670473,20672418-20672645,20673388-20673508,
20673604-20673702,20673802-20673833
Length = 188
Score = 59.7 bits (138), Expect = 2e-09
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Frame = +1
Query: 217 IGFVYPAYMSMKALE--SPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCI 390
+G+ YPAY K LE PQ D W YW++ A + +E + F V W P+Y K
Sbjct: 14 LGYAYPAYDCYKTLELNKPQIDQLRFWCQYWILLAFLTTLETITYFTVSWLPMYGEAKLA 73
Query: 391 FVICCYLPTEYNGSLVIYYRIIRPYYQKHHGRID 492
V+ + P + G+ +Y ++P +H ID
Sbjct: 74 LVLYLWYP-KTRGAKHVYESYLQPVLARHEADID 106
>09_04_0341 + 16820890-16820993,16821082-16821269,16821412-16821416
Length = 98
Score = 58.4 bits (135), Expect = 5e-09
Identities = 24/80 (30%), Positives = 47/80 (58%)
Frame = +1
Query: 256 LESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVICCYLPTEYNGSL 435
+ES K DD +WL YW++Y+ +++E ++ W PL++ K +FV LP ++ G+
Sbjct: 1 MESTSKVDDEQWLVYWILYSLITLMEMALHKVLYWIPLWYEAKVLFVAWLVLP-QFRGAS 59
Query: 436 VIYYRIIRPYYQKHHGRIDD 495
IY + +R +K+ ++ +
Sbjct: 60 FIYDKFVREQLKKNRVKLHE 79
>11_01_0354 +
2665570-2665601,2665796-2665894,2667158-2667202,
2667293-2667356,2667497-2667709,2669960-2670160
Length = 217
Score = 47.6 bits (108), Expect = 9e-06
Identities = 26/91 (28%), Positives = 42/91 (46%)
Frame = +1
Query: 220 GFVYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVI 399
G+ PA+ K LE+ + DD L +W Y + + V W P+Y +K F +
Sbjct: 15 GYAMPAFECFKTLET--RPDDAHMLRFWCQYWIIVSMVIACESFVSWMPMYGEIKLAFFV 72
Query: 400 CCYLPTEYNGSLVIYYRIIRPYYQKHHGRID 492
+ P + GS V+Y IRP ++ I+
Sbjct: 73 YLWYP-KTKGSDVVYDSFIRPTVMQYEPNIE 102
>12_01_0375 +
2930807-2930838,2930936-2930999,2931127-2931333,
2932385-2932458,2932831-2932858,2933268-2933456
Length = 197
Score = 31.5 bits (68), Expect = 0.64
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +1
Query: 349 IVGWFPLYWLLKCIFVICCYLPTEYNGSLVIYYRIIRPYYQKHHGRID 492
++ W P+Y +K F + + P + GS V+Y +RP ++ I+
Sbjct: 8 LISWMPMYGEIKLAFFVYLWYP-KTKGSDVVYDTFLRPIVMQYEPNIE 54
>08_02_0501 + 17836948-17837373,17837857-17839184,17839270-17839380,
17839719-17839998,17840275-17840396,17840451-17840556,
17840814-17841020,17841130-17841255,17841719-17841817,
17842265-17842456,17842555-17843073
Length = 1171
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Frame = +1
Query: 289 WLTYWVVYACFSIVEYFSDFIVGW-----FPLYWLLKCIFVICCYLP 414
W T+ V+Y F S + V W PLYWL + V+ +P
Sbjct: 1095 WYTFLVIYGSFPPTISTSAYHVFWEACASSPLYWLSTLVIVVTALIP 1141
>01_05_0148 + 18609853-18610058,18610347-18612669
Length = 842
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 440 ITRDPLYSVGR*QQITKMHFNSQYNGNQ 357
+ DPL S+ R +T++HF YNG +
Sbjct: 714 LKEDPLPSLSRLLNLTELHFTRAYNGEK 741
>09_02_0511 -
10079180-10079355,10079656-10079722,10080144-10080181,
10080255-10080336
Length = 120
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 337 FSDFIVGWFPLYWLLKCIFVI 399
+S+ IV WFP++ CIFVI
Sbjct: 84 YSNGIVQWFPVFEYWSCIFVI 104
>01_03_0303 + 14792842-14792949,14793659-14793760,14794657-14794800,
14794906-14794986,14795078-14795147,14795267-14795337,
14795427-14795594,14796030-14796074,14796449-14796511,
14796594-14796869,14797858-14797971,14798099-14798225,
14798315-14798484,14798743-14798841,14799577-14799630,
14801487-14801522,14801741-14801844,14801952-14802186,
14802377-14802609,14802846-14803346,14803422-14803716,
14805796-14805881,14806952-14807064,14807303-14807385,
14808014-14808866,14809215-14809364,14809963-14811146
Length = 1854
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = -2
Query: 404 QQITKMHFNSQYNGNQPTMKSEKYSTIE-KQAYTTQYVSHFVSSSFCGDS 258
+ +T M FN YNG QP + + K+A T Y S C DS
Sbjct: 1337 EYVTTMKFNETYNGQQPVVLDWAIGKVGCKEANMTSYACRSKHSE-CVDS 1385
>07_03_0636 + 20168180-20168462,20168961-20170303,20170401-20170678,
20170790-20170821,20170908-20171314,20171401-20171847
Length = 929
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +1
Query: 112 EQKVGVNRLYIFLGLVAFTGLYLVFGFGAEL----ICNSIGFVYPAYMSMKALESPQKDD 279
+ +VG NRL L +F GLYL+ GF L I Y Y + L+SP+ +
Sbjct: 823 DNEVGSNRL----SLSSFWGLYLICGFSCVLALLIFFLRICCQYSKYNNQVGLDSPEPEI 878
Query: 280 DTKWLTYWVVYACFSIVE 333
T+ + + S V+
Sbjct: 879 VTRSARLTTIKSIISFVD 896
>01_05_0011 +
17133501-17133738,17135335-17135607,17145224-17145348,
17145463-17145612,17145653-17145696,17145822-17146174,
17146280-17146602,17147010-17147105
Length = 533
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 136 LYIFLGLVAFTGLYLVFGFGAELICNSIGFVYPAYMSM 249
L + + + F L L+F FG E +SI F + YMS+
Sbjct: 105 LQVLIDFIHFA-LALIFNFGLEGEASSISFFFNLYMSL 141
>01_03_0306 + 14875755-14876822
Length = 355
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = -2
Query: 404 QQITKMHFNSQYNGNQPTMKSEKYSTI--EKQAYTTQYVSHFVSSSFCGDSR 255
+ IT M FN Y G QP + + E T Y H +S C DS+
Sbjct: 219 EYITTMRFNDTYEGQQPLVLDWAIGDVSCEVAKNMTSYACH-SGNSICVDSK 269
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,330,777
Number of Sequences: 37544
Number of extensions: 429532
Number of successful extensions: 1114
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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