Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0216
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44)    171   4e-43
SB_28902| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=0.088)           57   1e-08
SB_20155| Best HMM Match : Fe_dep_repress (HMM E-Value=2.6)            31   0.87 
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)                 31   0.87 
SB_13243| Best HMM Match : COX17 (HMM E-Value=1.7)                     31   1.1  
SB_5363| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_27204| Best HMM Match : RVT_1 (HMM E-Value=0.00085)                 30   2.0  
SB_10873| Best HMM Match : Exo_endo_phos (HMM E-Value=0.068)           30   2.0  
SB_907| Best HMM Match : RVT_1 (HMM E-Value=1.3e-27)                   30   2.0  
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)                       29   3.5  
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)              29   3.5  
SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)               28   6.1  
SB_44756| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_35343| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_24362| Best HMM Match : NOGCT (HMM E-Value=3.2)                     28   6.1  

>SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44)
          Length = 210

 Score =  171 bits (416), Expect = 4e-43
 Identities = 75/148 (50%), Positives = 105/148 (70%)
 Frame = +1

Query: 49  DNIEQSLNDKSKPWTKYFELAEQKVGVNRLYIFLGLVAFTGLYLVFGFGAELICNSIGFV 228
           +N+E  L +K+  +T      E+K  V +LY+FLGLV    LYL+FG+GA+LI   +GF 
Sbjct: 13  ENLENWLEEKNY-FTDALGKVEEKTKVKKLYLFLGLVGVFSLYLIFGYGADLIVTVLGFA 71

Query: 229 YPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVICCY 408
           YPAY S+KA+ES QKDDDT+WL YWVV+A F+IVE+FSD ++ WFPLY+L K IF+  C 
Sbjct: 72  YPAYQSVKAVESVQKDDDTQWLIYWVVFASFNIVEFFSDILLSWFPLYFLTKLIFLGWCM 131

Query: 409 LPTEYNGSLVIYYRIIRPYYQKHHGRID 492
            P  +NGS  +Y ++I+P+  +H  +ID
Sbjct: 132 APVSWNGSDTLYQKVIKPFVLRHQSQID 159


>SB_28902| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=0.088)
          Length = 110

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 25/57 (43%), Positives = 35/57 (61%)
 Frame = +1

Query: 133 RLYIFLGLVAFTGLYLVFGFGAELICNSIGFVYPAYMSMKALESPQKDDDTKWLTYW 303
           R+ + L +V FT LY+  G+ A   CN I  V+P Y S+ A+E+P  +  TKWL YW
Sbjct: 55  RIQVLL-MVLFTLLYVAEGYAAACFCNVIAVVFPVYASISAIENPDYEIGTKWLMYW 110


>SB_20155| Best HMM Match : Fe_dep_repress (HMM E-Value=2.6)
          Length = 310

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
 Frame = +1

Query: 259 ESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIC-----CYLPTEY 423
           E P K+DD   +  WV+   F  + Y    I G   + WLL   F+IC     CY  T Y
Sbjct: 209 EEPGKEDDDNTVLRWVICLIFMPL-YIVISIFG--IVIWLLMAPFLICSKQDSCYANTTY 265

Query: 424 NGSLVIYYRIIRPYYQKHH 480
           +    IY +++    + +H
Sbjct: 266 D----IYEKVVLAPVRAYH 280


>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
          Length = 942

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 227 TKPIELHINSAPKPNTKYKPVNATKPKKMYNLFTPTFCSA 108
           T+P+  H  S+P+P + + PVN T P       TP   +A
Sbjct: 225 TQPLSSHSGSSPQPGSAFSPVN-TPPNAQAQQMTPPSSAA 263


>SB_13243| Best HMM Match : COX17 (HMM E-Value=1.7)
          Length = 483

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +1

Query: 238 YMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIC--CYL 411
           Y+  + +  P+K  D  WL  +     + +  YF + I  +F   WL KCI  +C  C  
Sbjct: 308 YLWGQDISDPRKFLDNTWLKVFKFQPLWKVKNYFGEQIALYFA--WLGKCINSMCRQCLP 365

Query: 412 PTEYNGSLVI 441
            T+     V+
Sbjct: 366 VTQTESDFVL 375


>SB_5363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +1

Query: 238 YMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIC--CYL 411
           Y+  + +  P+K  D  WL  +     + +  YF + I  +F   WL KCI  +C  C  
Sbjct: 122 YLWGQDISDPRKFLDNTWLKVFKFQPLWKVKNYFGEQIALYFA--WLGKCINSMCRQCLP 179

Query: 412 PTEYNGSLVI 441
            T+     V+
Sbjct: 180 VTQTESDFVL 189


>SB_27204| Best HMM Match : RVT_1 (HMM E-Value=0.00085)
          Length = 646

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 480 WSYR*YGQHRETRLKCRFNAIKKIIMLPVWWQIPSERPIKPARFLH 617
           W +R YG H    +   FN+  K  M+P  W++ +  PI     LH
Sbjct: 368 WLWRDYGHHLAPVITKIFNSSLKHQMVPSLWKLANVTPIPKESPLH 413


>SB_10873| Best HMM Match : Exo_endo_phos (HMM E-Value=0.068)
          Length = 1142

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 480 WSYR*YGQHRETRLKCRFNAIKKIIMLPVWWQIPSERPIKPARFLH 617
           W +R YG H    +   FN+  K  M+P  W++ +  PI     LH
Sbjct: 635 WLWRDYGHHLAPVITKIFNSSLKHQMVPSLWKLANVTPIPKESPLH 680


>SB_907| Best HMM Match : RVT_1 (HMM E-Value=1.3e-27)
          Length = 681

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 480 WSYR*YGQHRETRLKCRFNAIKKIIMLPVWWQIPSERPIKPARFLH 617
           W +R YG H    +   FN+  K  M+P  W++ +  PI     LH
Sbjct: 410 WLWRDYGHHLAPVITKIFNSSLKHQMVPSLWKLANVTPIPKESPLH 455


>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3259

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 480  WSYR*YGQHRETRLKCRFNAIKKIIMLPVWWQIPSERPIKPARFLH 617
            W +R YG H    +   FN+  K  M+P  W++ +  PI     LH
Sbjct: 1631 WLWRDYGHHLAPVITKIFNSSLKHQMVPSLWKLANVTPIPKESPLH 1676


>SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 829

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 316 CFSIVEYFSDFIVGWFPLYWLLKCIFVICCYLPTEYNGSLVIY 444
           C ++V       +G F +++  +C     CY+P + NGS  IY
Sbjct: 374 CVTVVHDPPFLKIGEFNIFYDKECTLEHVCYVPVQLNGSESIY 416


>SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)
          Length = 2996

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +1

Query: 424 NGSLVIYYRIIRPYYQKHHGRIDDMANTGKQD*NAVLMQSKKL*CFPSGGRYHQK--DQL 597
           NG+  +  R++     K  GRID +      + N++L+ + +L   P+GG +H K  D+L
Sbjct: 368 NGAFPLNLRVMDLSNNKI-GRIDKIVLKDLVNLNSLLLNNNQLTILPNGGDFHNKQIDRL 426

Query: 598 NL 603
           +L
Sbjct: 427 DL 428


>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 2735

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -1

Query: 468  VVRTNDTVVDHEGPVVFSRQVATDHEDAL*QPVQWKPADDEIGKVLHDRKTGVHHPICKP 289
            +V    +VV H+ PVV  R     H+  +   V  +P       ++H   T V HP  +P
Sbjct: 1381 IVIHRPSVVLHQAPVVVHRPAVVYHQPPV---VVHQPPPLVHQPIIHSHDTYVSHPFFEP 1437

Query: 288  F 286
            F
Sbjct: 1438 F 1438


>SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 830

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -2

Query: 305 TQYVSHFVSSSFCGDSRAFIDMYAGYTK 222
           T +V HFV + FCG++R+ +  +  + +
Sbjct: 774 TAFVRHFVLARFCGENRSIVINFRSFNR 801


>SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)
          Length = 1724

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 112 RLVQNISSMACFCRSDFVLCCLYTLVIWM 26
           R ++NI +  C   S F LCC + L  W+
Sbjct: 100 RTLENIRARRCMRTSAFGLCCRFILAHWV 128


>SB_44756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = -2

Query: 386 HFNSQYNGNQPTMKSEKYSTIEKQAYTTQYVSHFVSSSFCGDSRAFIDMYAGYTKPIELH 207
           +F+++   N  T  +EKYST   + Y+T+    + + +    S    + Y+  TK  E +
Sbjct: 208 NFSTKATENYSTKATEKYSTKASENYSTKATEKYSTKAAENYSTKATEKYS--TKATEKY 265

Query: 206 INSAPKP-NTKYKPVNATKPKKMYN 135
              A +  +TK     +TK  K Y+
Sbjct: 266 STKATENFSTKATENYSTKATKNYS 290


>SB_35343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = +3

Query: 444 LPYHSSLLP---EASWSYR*YGQHRETRLKCRFNAIKKIIMLPVWWQIPSERPI-KPA 605
           LPY  + L     +SW  R +  H  T    R  A+K +I L     +P+++P+ KPA
Sbjct: 22  LPYQDTPLSPGLNSSWFERDHPLHEPTNPVSREEALKPLINLNELRPVPAKKPVQKPA 79


>SB_24362| Best HMM Match : NOGCT (HMM E-Value=3.2)
          Length = 273

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = -2

Query: 404 QQITKMHFNSQYNGNQPTMKSEKYSTIEKQAYTTQYVSHFVSSSFCGDSRAFIDMYAGYT 225
           +Q+ +       N N+   K  KYS+  +Q Y   ++   VSS F      F   Y   T
Sbjct: 136 KQMVEFVITGNPNENKTHGKWPKYSSENRQVYQAAFIESGVSSDFLAQKADFWTRYLPQT 195

Query: 224 K 222
           +
Sbjct: 196 E 196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,639,640
Number of Sequences: 59808
Number of extensions: 511423
Number of successful extensions: 1759
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1718
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)