Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0215
         (358 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)               101   2e-22
SB_40036| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.16 
SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)               27   3.4  
SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21)         27   4.5  
SB_23856| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)                     26   7.8  

>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score =  101 bits (242), Expect = 2e-22
 Identities = 45/52 (86%), Positives = 52/52 (100%)
 Frame = +2

Query: 194 DVQFEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQ 349
           DVQF+++LPPILNALEV+NR+PRL+LEVAQHLGENTVRTIAMDGTEGL+RGQ
Sbjct: 85  DVQFDEDLPPILNALEVENRTPRLILEVAQHLGENTVRTIAMDGTEGLIRGQ 136


>SB_40036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 31.9 bits (69), Expect = 0.16
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -1

Query: 304 NCVLTQMLGYLKYEAGRSILHLKGI*NRRQVIFEL-HIYHSTDNGNNLTLAFSCRFSS 134
           NC+L  + GYLK ++   I++  G     QV++ L  +Y S + GNNL   F    +S
Sbjct: 48  NCLLWTIYGYLKDDSTIIIVNFVGA--LLQVVYILCFLYFSRERGNNLAFLFYSAIAS 103


>SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)
          Length = 1341

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 220 RQVIFELHIYHSTDNGNNLTLAF 152
           RQ     H +HS D+ NNLT AF
Sbjct: 518 RQPYVTTHNHHSHDHNNNLTTAF 540


>SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21)
          Length = 636

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 203 FEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGT 328
           F++++ P+LN L +  +S  L L   ++ G N V     +GT
Sbjct: 174 FQESVCPVLNTLTLHIKSSELDLNRPRNRGSNKVENGKNEGT 215


>SB_23856| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 263 GGEIDFAPQGHLESEAGYLRIAHL 192
           G  ID +P G +E E  +LRI H+
Sbjct: 54  GYVIDVSPDGRVEMEKDHLRITHM 77


>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
          Length = 2155

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 200 QFEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTI 313
           Q ED++   LNAL++Q  S    LE  Q + E   R +
Sbjct: 618 QKEDHMVEELNALKIQLNSANTELESTQSMNEKLKRKL 655


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,735,296
Number of Sequences: 59808
Number of extensions: 186765
Number of successful extensions: 403
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)