Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0215
         (358 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   0.82 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   1.1  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   1.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   2.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   4.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   4.4  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   5.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   7.6  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 0.82
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 14  MLGAISRVGSGILAVKSVAEKSLSECGKIVAVN 112
           MLG +S +G+G++    ++ KSL     +  +N
Sbjct: 61  MLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVIN 93


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +2

Query: 5   FLKMLGAISRVGSGILAVKSVAEKSLSEC 91
           FLK LGA+   GSG  AV  V   S   C
Sbjct: 172 FLKKLGAVDIAGSG--AVHLVGGSSALAC 198


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 14  MLGAISRVGSGILAVKSVAEKSLSECGKIVAVN 112
           MLG +S +G+G++    ++ KSL     +  +N
Sbjct: 27  MLGFVSVMGNGMVVYIFLSTKSLRTPSNLFVIN 59


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 251 RSPRLVLEVAQHLGENTVRTIAMDGTE 331
           RSP  + ++AQ+ G N +   A+D T+
Sbjct: 897 RSPDTLRKIAQNRGTNPLAPDAVDLTQ 923


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -1

Query: 355 YGLPTD*AFSTVHGNGPNCVLTQMLGYLKYEAGRSILH 242
           +G P D      +  GPN +   +L Y K E   +I +
Sbjct: 647 FGFPLDKPLYDFNYEGPNMLFKDILIYHKDEFDMNITY 684


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -1

Query: 355 YGLPTD*AFSTVHGNGPNCVLTQMLGYLKYEAGRSILH 242
           +G P D      +  GPN +   +L Y K E   +I +
Sbjct: 647 FGFPLDKPLYDFNYEGPNMLFKDILIYHKDEFDMNITY 684


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -1

Query: 274 LKYEAGRSILHLKGI*NRRQVIFELHIYH 188
           L+    + ++HLK I +   ++   +IYH
Sbjct: 100 LRDSVTKYLIHLKEIEDTEPILLIAYIYH 128


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 88  MWKNRCSQCR*QE 126
           +W   CSQC  QE
Sbjct: 356 LWSGFCSQCIWQE 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,238
Number of Sequences: 438
Number of extensions: 1571
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)