Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0214
(424 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P50882 Cluster: 60S ribosomal protein L9; n=17; Eukaryo... 205 3e-52
UniRef50_P32969 Cluster: 60S ribosomal protein L9; n=86; Eukaryo... 174 5e-43
UniRef50_O02376 Cluster: 60S ribosomal protein L9; n=1; Haemonch... 167 6e-41
UniRef50_P49210 Cluster: 60S ribosomal protein L9; n=55; Eukaryo... 160 1e-38
UniRef50_Q54XI5 Cluster: 60S ribosomal protein L9; n=1; Dictyost... 142 3e-33
UniRef50_P05738 Cluster: 60S ribosomal protein L9-A; n=40; Eukar... 140 1e-32
UniRef50_Q10232 Cluster: 60S ribosomal protein L9-A; n=6; Eukary... 131 7e-30
UniRef50_UPI0000D9FBAF Cluster: PREDICTED: similar to 60S riboso... 122 4e-27
UniRef50_UPI00004985C5 Cluster: 60S ribosomal protein L9; n=2; E... 120 2e-26
UniRef50_Q7QU08 Cluster: GLP_108_35846_36403; n=1; Giardia lambl... 119 3e-26
UniRef50_Q5JJG4 Cluster: 50S ribosomal protein L6P; n=3; Archaea... 108 4e-23
UniRef50_A0DI71 Cluster: Chromosome undetermined scaffold_51, wh... 108 5e-23
UniRef50_Q9AW64 Cluster: 60S ribosomal protein L9; n=1; Guillard... 107 1e-22
UniRef50_Q8U015 Cluster: 50S ribosomal protein L6P; n=14; Euryar... 103 2e-21
UniRef50_A1RXT3 Cluster: Ribosomal protein L6; n=2; Thermoprotei... 96 2e-19
UniRef50_Q4P4X4 Cluster: Putative uncharacterized protein; n=1; ... 94 1e-18
UniRef50_UPI0001554F35 Cluster: PREDICTED: similar to Chain A, S... 88 6e-17
UniRef50_Q8SSF7 Cluster: 60S RIBOSOMAL PROTEIN L9; n=1; Encephal... 88 6e-17
UniRef50_A3CT13 Cluster: 50S ribosomal protein L6P; n=2; Methano... 86 2e-16
UniRef50_Q8PV34 Cluster: 50S ribosomal protein L6P; n=4; Methano... 85 4e-16
UniRef50_Q74MR6 Cluster: 50S ribosomal protein L6P; n=1; Nanoarc... 85 6e-16
UniRef50_O05637 Cluster: 50S ribosomal protein L6P; n=8; Thermop... 83 2e-15
UniRef50_O28370 Cluster: 50S ribosomal protein L6P; n=4; Euryarc... 81 1e-14
UniRef50_Q3LWE8 Cluster: Ribosomal protein L9; n=1; Bigelowiella... 79 3e-14
UniRef50_Q673R2 Cluster: 50S ribosomal protein L6P; n=2; environ... 77 2e-13
UniRef50_A2GN76 Cluster: Ribosomal protein L6, putative; n=2; Tr... 76 3e-13
UniRef50_Q8ZVA7 Cluster: 50S ribosomal protein L6P; n=5; Thermop... 76 3e-13
UniRef50_UPI0000DA3DDB Cluster: PREDICTED: similar to 60S riboso... 73 3e-12
UniRef50_P14135 Cluster: 50S ribosomal protein L6P; n=5; Halobac... 72 4e-12
UniRef50_A7DSX9 Cluster: Ribosomal protein L6; n=1; Candidatus N... 72 6e-12
UniRef50_Q8TW14 Cluster: 50S ribosomal protein L6P; n=3; cellula... 71 1e-11
UniRef50_Q97BW0 Cluster: 50S ribosomal protein L6P; n=1; Thermop... 63 3e-09
UniRef50_A0RVY9 Cluster: Ribosomal protein L6P/L9E; n=1; Cenarch... 62 3e-09
UniRef50_Q6L1B1 Cluster: 50S ribosomal protein L6P; n=3; Thermop... 62 6e-09
UniRef50_UPI000021E22B Cluster: PREDICTED: similar to ribosomal ... 60 2e-08
UniRef50_Q6E6D2 Cluster: Large subunit ribosomal protein L9e; n=... 56 3e-07
UniRef50_A4M9T7 Cluster: 50S ribosomal protein L6; n=3; Thermoto... 53 2e-06
UniRef50_Q48D51 Cluster: 50S ribosomal protein L6; n=6; Proteoba... 53 3e-06
UniRef50_Q661C7 Cluster: 50S ribosomal protein L6; n=9; cellular... 51 8e-06
UniRef50_UPI0000DA368E Cluster: PREDICTED: similar to 60S riboso... 51 1e-05
UniRef50_Q8ETW8 Cluster: 50S ribosomal protein L6; n=40; Bacteri... 51 1e-05
UniRef50_A0BWM5 Cluster: Chromosome undetermined scaffold_132, w... 46 2e-04
UniRef50_Q9ZAE4 Cluster: 50S ribosomal protein L6; n=4; cellular... 46 2e-04
UniRef50_Q8R7W9 Cluster: 50S ribosomal protein L6; n=22; Bacteri... 46 3e-04
UniRef50_P46898 Cluster: 50S ribosomal protein L6; n=7; Bacilli|... 46 3e-04
UniRef50_A5GIT1 Cluster: 50S ribosomal protein L6; n=7; Bacteria... 45 6e-04
UniRef50_Q847P4 Cluster: 50S ribosomal protein L6; n=1; Aster ye... 44 0.001
UniRef50_Q83ER1 Cluster: 50S ribosomal protein L6; n=108; Proteo... 44 0.001
UniRef50_Q6YR07 Cluster: 50S ribosomal protein L6; n=16; Firmicu... 43 0.002
UniRef50_A5LSZ6 Cluster: 50S ribosomal protein L6; n=1; Streptoc... 42 0.007
UniRef50_Q0ID19 Cluster: 50S ribosomal protein L6; n=6; Bacteria... 41 0.009
UniRef50_Q8A491 Cluster: 50S ribosomal protein L6; n=34; Bacteri... 41 0.012
UniRef50_Q2JIL3 Cluster: 50S ribosomal protein L6; n=44; cellula... 40 0.016
UniRef50_Q9ZCS0 Cluster: 50S ribosomal protein L6; n=10; Rickett... 40 0.016
UniRef50_Q9RSL3 Cluster: 50S ribosomal protein L6; n=65; cellula... 40 0.021
UniRef50_Q3ZZN4 Cluster: 50S ribosomal protein L6; n=7; Bacteria... 40 0.021
UniRef50_Q7VQD3 Cluster: 50S ribosomal subunit protein L6; n=2; ... 40 0.028
UniRef50_Q6KI40 Cluster: 50S ribosomal protein l6; n=4; Mycoplas... 40 0.028
UniRef50_Q9A8T8 Cluster: 50S ribosomal protein L6; n=16; Bacteri... 40 0.028
UniRef50_O23049 Cluster: 50S ribosomal protein L6, chloroplast p... 40 0.028
UniRef50_Q8KAI6 Cluster: 50S ribosomal protein L6; n=15; Bacteri... 39 0.037
UniRef50_Q98PZ7 Cluster: 50S ribosomal protein L6; n=29; Bacteri... 39 0.048
UniRef50_Q9ZI38 Cluster: 50S ribosomal protein L6; n=2; Aquifex ... 38 0.064
UniRef50_Q7UN05 Cluster: 50S ribosomal protein L6; n=3; Planctom... 38 0.085
UniRef50_O67565 Cluster: 50S ribosomal protein L6; n=1; Aquifex ... 38 0.085
UniRef50_Q8DML8 Cluster: 50S ribosomal protein L6; n=4; cellular... 37 0.20
UniRef50_Q6Q8X3 Cluster: 50S ribosomal protein L6; n=6; Proteoba... 36 0.34
UniRef50_Q1XDI8 Cluster: Chloroplast 50S ribosomal protein L6; n... 36 0.34
UniRef50_Q6E783 Cluster: Ribosomal protein L6; n=5; Oomycetes|Re... 35 0.60
UniRef50_Q1ZBZ7 Cluster: 50S ribosomal protein L6; n=1; Psychrom... 35 0.79
UniRef50_A0YJS9 Cluster: 50S ribosomal protein L6; n=2; cellular... 35 0.79
UniRef50_Q11HR7 Cluster: 50S ribosomal protein L6; n=73; Proteob... 35 0.79
UniRef50_Q4QI55 Cluster: Putative uncharacterized protein; n=3; ... 34 1.0
UniRef50_O21255 Cluster: Mitochondrial 60S ribosomal protein L6;... 34 1.4
UniRef50_Q5FM76 Cluster: 50S ribosomal protein L6; n=10; Firmicu... 34 1.4
UniRef50_Q7NEG7 Cluster: 50S ribosomal protein L6; n=19; Bacteri... 34 1.4
UniRef50_Q4G353 Cluster: Chloroplast 50S ribosomal protein L6; n... 34 1.4
UniRef50_A6W8A5 Cluster: Putative uncharacterized protein; n=2; ... 33 1.8
UniRef50_A6DRC5 Cluster: 50S ribosomal protein L6; n=1; Lentisph... 33 1.8
UniRef50_P47412 Cluster: 50S ribosomal protein L6; n=6; Mycoplas... 33 2.4
UniRef50_Q74L75 Cluster: 50S ribosomal protein L6; n=7; Bacteria... 33 2.4
UniRef50_Q2IJ73 Cluster: 50S ribosomal protein L6; n=6; Bacteria... 33 2.4
UniRef50_UPI000049A156 Cluster: ankyrin; n=9; Entamoeba histolyt... 33 3.2
UniRef50_UPI00015A3C61 Cluster: vomeronasal 2 receptor 635; n=26... 32 5.6
UniRef50_Q9W0Q1 Cluster: CG17090-PA, isoform A; n=6; Eumetazoa|R... 32 5.6
UniRef50_Q9G865 Cluster: Ribosomal protein L6; n=1; Malawimonas ... 32 5.6
UniRef50_Q7Q7P3 Cluster: DNA polymerase; n=6; Eukaryota|Rep: DNA... 32 5.6
UniRef50_Q9XD21 Cluster: 50S ribosomal protein L6; n=36; cellula... 32 5.6
UniRef50_A5WFU5 Cluster: Pyruvate oxidase; n=1; Psychrobacter sp... 31 7.4
UniRef50_Q0P3I5 Cluster: Mitochondrion, complete genome; n=1; Os... 31 7.4
UniRef50_Q0CCB3 Cluster: Putative uncharacterized protein; n=1; ... 31 7.4
UniRef50_P27316 Cluster: RNA-directed RNA polymerase; n=63; Phle... 31 7.4
UniRef50_UPI000067342D Cluster: COG2909: ATP-dependent transcrip... 31 9.7
UniRef50_Q7WZS2 Cluster: 50S ribosomal protein L6; n=1; Candidat... 31 9.7
UniRef50_Q26CC0 Cluster: Putative uncharacterized protein; n=1; ... 31 9.7
UniRef50_Q8WTL7 Cluster: Putative uncharacterized protein; n=1; ... 31 9.7
UniRef50_A5K579 Cluster: Putative uncharacterized protein; n=3; ... 31 9.7
UniRef50_P41843 Cluster: Uncharacterized protein T20B12.3; n=2; ... 31 9.7
UniRef50_Q2S3P9 Cluster: 50S ribosomal protein L6; n=1; Saliniba... 31 9.7
UniRef50_Q63XR8 Cluster: Error-prone DNA polymerase; n=22; Burkh... 31 9.7
>UniRef50_P50882 Cluster: 60S ribosomal protein L9; n=17;
Eukaryota|Rep: 60S ribosomal protein L9 - Drosophila
melanogaster (Fruit fly)
Length = 190
Score = 205 bits (500), Expect = 3e-52
Identities = 95/128 (74%), Positives = 111/128 (86%)
Frame = +1
Query: 40 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 219
M+ I +NQ VKIP + VK+R+VT+ G RG LKR+FKHLA+D+ M + R LKVEKWFG
Sbjct: 1 MRTINSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMYMPDKRTLKVEKWFG 60
Query: 220 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKY 399
+KKELAAVRTVCSH+ENMIKGVT GFQYKMRAVYAHFPINCVT+E N++IEIRNFLGEKY
Sbjct: 61 TKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKY 120
Query: 400 IRRVKMAP 423
IRRV+MAP
Sbjct: 121 IRRVEMAP 128
>UniRef50_P32969 Cluster: 60S ribosomal protein L9; n=86;
Eukaryota|Rep: 60S ribosomal protein L9 - Homo sapiens
(Human)
Length = 192
Score = 174 bits (424), Expect = 5e-43
Identities = 78/130 (60%), Positives = 104/130 (80%), Gaps = 2/130 (1%)
Frame = +1
Query: 40 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL--LKVEKW 213
MK I++NQ V IP+ + + +K R V VKGPRG L+R+F H+ V++ ++ + L+V+KW
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 214 FGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGE 393
+G++KELA VRT+CSHV+NMIKGVT GF+YKMR+VYAHFPIN V E S++EIRNFLGE
Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120
Query: 394 KYIRRVKMAP 423
KYIRRV+M P
Sbjct: 121 KYIRRVRMRP 130
>UniRef50_O02376 Cluster: 60S ribosomal protein L9; n=1; Haemonchus
contortus|Rep: 60S ribosomal protein L9 - Haemonchus
contortus (Barber pole worm)
Length = 141
Score = 167 bits (407), Expect = 6e-41
Identities = 74/126 (58%), Positives = 96/126 (76%)
Frame = +1
Query: 40 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 219
MK + +N V PDG+T VK+R+V V GPRG LKR+F+HL +++ V L+V KWFG
Sbjct: 1 MKLVESNDTVDFPDGVTFTVKNRVVHVTGPRGTLKRDFRHLHMEMERVGKNQLRVRKWFG 60
Query: 220 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKY 399
+KE+AA+RTVCSH++NMIKGVTKGF+YKMR+VYAHFPIN +G +EIRNFLGEK
Sbjct: 61 VRKEIAAIRTVCSHIQNMIKGVTKGFRYKMRSVYAHFPINVTLQDGGRTVEIRNFLGEKI 120
Query: 400 IRRVKM 417
+R V +
Sbjct: 121 VRPVPL 126
>UniRef50_P49210 Cluster: 60S ribosomal protein L9; n=55;
Eukaryota|Rep: 60S ribosomal protein L9 - Oryza sativa
subsp. japonica (Rice)
Length = 190
Score = 160 bits (388), Expect = 1e-38
Identities = 72/127 (56%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Frame = +1
Query: 40 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-RLLKVEKWF 216
MK I+A++ ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++ R L+V+ WF
Sbjct: 1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60
Query: 217 GSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 396
G+++ +AA+RT SHV+N+I GVTKG++YKMR VYAHFPIN T N+ IEIRNFLGEK
Sbjct: 61 GTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEK 120
Query: 397 YIRRVKM 417
+R+V M
Sbjct: 121 KVRKVDM 127
>UniRef50_Q54XI5 Cluster: 60S ribosomal protein L9; n=1;
Dictyostelium discoideum AX4|Rep: 60S ribosomal protein
L9 - Dictyostelium discoideum AX4
Length = 206
Score = 142 bits (344), Expect = 3e-33
Identities = 60/111 (54%), Positives = 84/111 (75%)
Frame = +1
Query: 85 LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHV 264
+TV VK R V V GPRG L ++F H +VDI +V + L V+ WFG++K++A ++T+ S +
Sbjct: 34 VTVDVKGRSVKVTGPRGTLSKSFDHASVDINLVGKKELTVDLWFGNRKQIACIKTITSII 93
Query: 265 ENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKM 417
ENMI GVTKG++YKMR VYAHFPIN T+G ++EIRNF GEK +RR+++
Sbjct: 94 ENMITGVTKGYEYKMRFVYAHFPINVAVTDGGRVVEIRNFFGEKIVRRIEL 144
>UniRef50_P05738 Cluster: 60S ribosomal protein L9-A; n=40;
Eukaryota|Rep: 60S ribosomal protein L9-A -
Saccharomyces cerevisiae (Baker's yeast)
Length = 191
Score = 140 bits (339), Expect = 1e-32
Identities = 69/126 (54%), Positives = 90/126 (71%), Gaps = 2/126 (1%)
Frame = +1
Query: 40 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 219
MK I Q++++P+G+TV +KSR+V V GPRG L +N KH+ V VN +L+KV G
Sbjct: 1 MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNG 60
Query: 220 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPI--NCVTTEGNSIIEIRNFLGE 393
+K +AA+RTV S V+NMI GVTKG++YKMR VYAHFPI N V +G IE+RNFLG+
Sbjct: 61 GRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGD 120
Query: 394 KYIRRV 411
K IR V
Sbjct: 121 KKIRNV 126
>UniRef50_Q10232 Cluster: 60S ribosomal protein L9-A; n=6;
Eukaryota|Rep: 60S ribosomal protein L9-A -
Schizosaccharomyces pombe (Fission yeast)
Length = 190
Score = 131 bits (316), Expect = 7e-30
Identities = 61/127 (48%), Positives = 87/127 (68%)
Frame = +1
Query: 43 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 222
+ I ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGS 61
Query: 223 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYI 402
+K A +R+V S + NMI GVT+GF+YKMR VYAHFPIN TE +++EIRNFLGE+
Sbjct: 62 RKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121
Query: 403 RRVKMAP 423
R +K P
Sbjct: 122 RVIKCLP 128
>UniRef50_UPI0000D9FBAF Cluster: PREDICTED: similar to 60S ribosomal
protein L9, partial; n=1; Macaca mulatta|Rep: PREDICTED:
similar to 60S ribosomal protein L9, partial - Macaca
mulatta
Length = 179
Score = 122 bits (293), Expect = 4e-27
Identities = 64/120 (53%), Positives = 80/120 (66%), Gaps = 4/120 (3%)
Frame = +1
Query: 40 MKQIVANQKVKIP-DGLTVHV--KSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-RLLKVE 207
MK I + ++IP DG TV V KSR + V G G L+R F+H+ VD+++V R + VE
Sbjct: 60 MKTIHSQIDIQIPEDGSTVKVTLKSRHIVVSGKYGKLERTFRHIPVDMKLVEDGRKITVE 119
Query: 208 KWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFL 387
WFG K A +RTVCSH+ENMI GV + +QYK+R VYAHFPIN T S IEIRNFL
Sbjct: 120 MWFGLTKNKACIRTVCSHIENMITGVRQRYQYKLRFVYAHFPINSNITNDGSTIEIRNFL 179
>UniRef50_UPI00004985C5 Cluster: 60S ribosomal protein L9; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L9 - Entamoeba histolytica HM-1:IMSS
Length = 197
Score = 120 bits (288), Expect = 2e-26
Identities = 54/128 (42%), Positives = 84/128 (65%), Gaps = 9/128 (7%)
Frame = +1
Query: 61 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI-------RMVNPR--LLKVEKW 213
+ V IP+G+ + + + + V GPRG L R F+H VDI + P+ ++ ++ W
Sbjct: 9 EHVVIPEGVNIEINRKNIKVTGPRGSLTREFQHPKVDIYASKLVVKKEGPKENVVVIDMW 68
Query: 214 FGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGE 393
+G++++ A VRT+ SH++NMI GVTKG+QYKMR VYAHFP+ V + I+++NFLGE
Sbjct: 69 YGNRRDSAVVRTIASHIKNMITGVTKGYQYKMRVVYAHFPVTLVIADDGKSIQVQNFLGE 128
Query: 394 KYIRRVKM 417
K R ++M
Sbjct: 129 KRTRHIEM 136
>UniRef50_Q7QU08 Cluster: GLP_108_35846_36403; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_108_35846_36403 - Giardia lamblia
ATCC 50803
Length = 185
Score = 119 bits (286), Expect = 3e-26
Identities = 55/125 (44%), Positives = 75/125 (60%)
Frame = +1
Query: 49 IVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKK 228
+ ++ +K+P + + R+VTVKG +G L R+F H +DI N + V WF K
Sbjct: 3 LCSSMTIKVPTDVECTINKRVVTVKGKKGTLVRDFSHAPLDITHANDTI-SVAVWFPRGK 61
Query: 229 ELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRR 408
A RT+CSH+ENM KGVT GF+YKMR YAHFPI + N IEIRNF+ + RR
Sbjct: 62 RNALPRTICSHIENMFKGVTYGFEYKMRLAYAHFPIAATVVDNNKAIEIRNFMHQIKTRR 121
Query: 409 VKMAP 423
++ P
Sbjct: 122 IECLP 126
>UniRef50_Q5JJG4 Cluster: 50S ribosomal protein L6P; n=3;
Archaea|Rep: 50S ribosomal protein L6P - Pyrococcus
kodakaraensis (Thermococcus kodakaraensis)
Length = 184
Score = 108 bits (260), Expect = 4e-23
Identities = 53/121 (43%), Positives = 84/121 (69%)
Frame = +1
Query: 61 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAA 240
++++IP+G+ V V+ V VKGP+G L+R K+ V I + +++ + K F KK++A
Sbjct: 9 EEIEIPEGVEVTVEGNTVKVKGPKGELQRELKYPGVQIFTEDGKVV-IYKEFPRKKDVAI 67
Query: 241 VRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 420
VRT +H+ NMIKGVT+GF+Y+++ VY+HFP+ V +G+ ++ I NFLGEK RR K+
Sbjct: 68 VRTFKAHINNMIKGVTEGFKYRLKVVYSHFPMT-VKVQGDEVV-IENFLGEKNPRRAKIL 125
Query: 421 P 423
P
Sbjct: 126 P 126
>UniRef50_A0DI71 Cluster: Chromosome undetermined scaffold_51, whole
genome shotgun sequence; n=6; Oligohymenophorea|Rep:
Chromosome undetermined scaffold_51, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 196
Score = 108 bits (259), Expect = 5e-23
Identities = 57/137 (41%), Positives = 82/137 (59%), Gaps = 9/137 (6%)
Frame = +1
Query: 40 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRM---VNPR------ 192
MK I+ + V IP+ + + KS++V VKGPRG L +NF+H A+DI++ VN +
Sbjct: 1 MKYILTEEHVPIPEKIEITQKSKVVKVKGPRGELTKNFRHSALDIQVQKKVNKKNNVAKS 60
Query: 193 LLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIE 372
+ V W +K+ V +V S + NMI+GVT G+++KM YAHFPI +E
Sbjct: 61 RVSVRMWQSYRKQRCQVNSVASQIRNMIRGVTTGYKFKMVLAYAHFPIIINLIGNGQGVE 120
Query: 373 IRNFLGEKYIRRVKMAP 423
I+NFLGEK IR +K P
Sbjct: 121 IKNFLGEKIIRTIKCLP 137
>UniRef50_Q9AW64 Cluster: 60S ribosomal protein L9; n=1; Guillardia
theta|Rep: 60S ribosomal protein L9 - Guillardia theta
(Cryptomonas phi)
Length = 188
Score = 107 bits (256), Expect = 1e-22
Identities = 51/127 (40%), Positives = 78/127 (61%), Gaps = 1/127 (0%)
Frame = +1
Query: 40 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL-LKVEKWF 216
M I +K+KIP + + K+R ++ G G + R+F+ + IR + + + W
Sbjct: 1 MLTIKTIRKIKIPKNVKIKTKARKISATGSLGSIIRSFEKTQISIRYFEKKKEIILLLWM 60
Query: 217 GSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 396
KK+LA + T+ SH+ NMI GV+ GF+Y ++ +YAHFPIN T+ S +EIRNFLGEK
Sbjct: 61 AGKKQLAKLNTIASHITNMIVGVSLGFEYILQPIYAHFPINLSITDDGSCLEIRNFLGEK 120
Query: 397 YIRRVKM 417
IR++ M
Sbjct: 121 RIRKIYM 127
>UniRef50_Q8U015 Cluster: 50S ribosomal protein L6P; n=14;
Euryarchaeota|Rep: 50S ribosomal protein L6P -
Pyrococcus furiosus
Length = 184
Score = 103 bits (247), Expect = 2e-21
Identities = 53/121 (43%), Positives = 81/121 (66%)
Frame = +1
Query: 61 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAA 240
++V+IP+G+ V V+ V VKGP+G L+R F + I + ++ + K F +K++A
Sbjct: 9 EEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFTEDGNVV-IYKDFPRRKDVAI 67
Query: 241 VRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 420
RT +H+ NMIKGVT+GF YK++ VY+HFPI+ V +G+ +I I NFLGEK R+ K+
Sbjct: 68 ARTFAAHIRNMIKGVTEGFTYKLKVVYSHFPIS-VKVQGDEVI-IENFLGEKAPRKAKIL 125
Query: 421 P 423
P
Sbjct: 126 P 126
>UniRef50_A1RXT3 Cluster: Ribosomal protein L6; n=2;
Thermoprotei|Rep: Ribosomal protein L6 - Thermofilum
pendens (strain Hrk 5)
Length = 191
Score = 96.3 bits (229), Expect = 2e-19
Identities = 53/129 (41%), Positives = 81/129 (62%), Gaps = 1/129 (0%)
Frame = +1
Query: 40 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLA-VDIRMVNPRLLKVEKWF 216
M+ + + V IP+G+ VHV + V V+GP G ++++F H + IR V + VE +
Sbjct: 1 MRVLQKTESVPIPEGVKVHVNGKRVEVEGPLGKVEKDFSHARRISIR-VEGNSVVVETFH 59
Query: 217 GSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 396
+KK+ A V T+ S + NMI GVTKG++YK++ VYAHFP++ + E + II I NFLGE+
Sbjct: 60 ATKKDYALVGTIASIINNMIIGVTKGYRYKLKIVYAHFPMS-LKVEKDKII-IENFLGER 117
Query: 397 YIRRVKMAP 423
R + P
Sbjct: 118 GKRIAGIMP 126
>UniRef50_Q4P4X4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 252
Score = 93.9 bits (223), Expect = 1e-18
Identities = 46/97 (47%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Frame = +1
Query: 136 VLKRNFKHLAVDIRMVNP---RLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYK 306
V +++ KH+ +D R++ + +K W +K A +RT + V NMIKGVT GFQYK
Sbjct: 92 VSQQSLKHMNLDARIIKSPAGQKIKFVVWHAGRKHAACLRTAQACVANMIKGVTVGFQYK 151
Query: 307 MRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKM 417
MRAVYAHFPIN + EIRNFLGEK +R + M
Sbjct: 152 MRAVYAHFPINIIIAGDKKSAEIRNFLGEKRVRNIAM 188
Score = 33.9 bits (74), Expect = 1.4
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 40 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRN 150
M QI + +P ++V V SR+ TVKGPRG L ++
Sbjct: 1 MLQIFKELDLAVPADVSVSVSSRVFTVKGPRGSLTKS 37
>UniRef50_UPI0001554F35 Cluster: PREDICTED: similar to Chain A,
Solution Structure Of The N-Terminal Domain Of Human
Ribosomal Protein L9; n=1; Ornithorhynchus anatinus|Rep:
PREDICTED: similar to Chain A, Solution Structure Of The
N-Terminal Domain Of Human Ribosomal Protein L9 -
Ornithorhynchus anatinus
Length = 143
Score = 88.2 bits (209), Expect = 6e-17
Identities = 42/87 (48%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
Frame = +1
Query: 40 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLK--VEKW 213
MK I++NQ V IP + + +K R V VKGP+G L R+F H+ V++ ++ +L K V+KW
Sbjct: 1 MKTILSNQTVDIPANIGIILKGRTVIVKGPQGSLHRDFNHINVELSLLGKKLKKFHVDKW 60
Query: 214 FGSKKELAAVRTVCSHVENMIKGVTKG 294
+G++KELA V T+CS V+N IK VT G
Sbjct: 61 WGNRKELATVHTICSPVQNTIKWVTLG 87
>UniRef50_Q8SSF7 Cluster: 60S RIBOSOMAL PROTEIN L9; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L9 -
Encephalitozoon cuniculi
Length = 204
Score = 88.2 bits (209), Expect = 6e-17
Identities = 48/133 (36%), Positives = 77/133 (57%), Gaps = 2/133 (1%)
Frame = +1
Query: 25 QQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRG-VLKRNFKH-LAVDIRMVNPRLL 198
Q+ + +I+ + VK+P+ T + ++ T +GP+G +++ +H L DI N +
Sbjct: 16 QKDLPLMRILVTRIVKVPEDCTATQEGKIFTFQGPKGSIVEDCTRHPLTFDIHEGN---I 72
Query: 199 KVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIR 378
++ W G +K +A TV S + N IK VT GF Y M+AVY HF IN E I+ ++
Sbjct: 73 RIRLWNGKRKAMALAITVESLLRNAIKAVTVGFAYTMKAVYNHFSINMEIKEDGKILLVK 132
Query: 379 NFLGEKYIRRVKM 417
NFLGEK ++R +M
Sbjct: 133 NFLGEKNVKRFRM 145
>UniRef50_A3CT13 Cluster: 50S ribosomal protein L6P; n=2;
Methanomicrobiales|Rep: 50S ribosomal protein L6P -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 174
Score = 86.2 bits (204), Expect = 2e-16
Identities = 47/119 (39%), Positives = 74/119 (62%)
Frame = +1
Query: 61 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAA 240
++V+IP G+ V + ++TV GP+G L R+ + +D+ MV + V K+ LA
Sbjct: 5 RQVEIPPGVDVTLDGGVLTVSGPKGTLVRDMRFPQIDL-MVEGGEVVVSTASEKKRILAM 63
Query: 241 VRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKM 417
T+ +H +NMI+GV G++Y+M+ VY+HFPI + +GN +EI NFLGEK R K+
Sbjct: 64 TGTLEAHAKNMIRGVADGYEYRMKVVYSHFPIQ-LKQQGNR-LEITNFLGEKQPRIAKI 120
>UniRef50_Q8PV34 Cluster: 50S ribosomal protein L6P; n=4;
Methanomicrobia|Rep: 50S ribosomal protein L6P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 176
Score = 85.4 bits (202), Expect = 4e-16
Identities = 45/117 (38%), Positives = 74/117 (63%)
Frame = +1
Query: 67 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVR 246
++IP+G++V + + T KGP+G ++R F + + I + ++ V+ K++ A V
Sbjct: 9 IEIPEGVSVSLSQDVFTAKGPKGTVERTFWYPGIKIEVREGEVV-VDAESSRKEQKAMVG 67
Query: 247 TVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKM 417
T SH++N+I GV++GF+ KM VYAHFP+ V EG +++ I NFLGEK R K+
Sbjct: 68 TFASHLKNLIIGVSEGFECKMNIVYAHFPMQ-VKVEGKTLV-IGNFLGEKKPRIAKI 122
>UniRef50_Q74MR6 Cluster: 50S ribosomal protein L6P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L6P -
Nanoarchaeum equitans
Length = 192
Score = 85.0 bits (201), Expect = 6e-16
Identities = 40/119 (33%), Positives = 72/119 (60%)
Frame = +1
Query: 40 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 219
M+ + ++ IP+ + V ++ ++ V GP+G ++R F H + + VN + +E +F
Sbjct: 1 MRIPIIKYEIPIPENVKVSYENNILKVSGPKGEVERKFYHPLIKLS-VNDNKIILETYFA 59
Query: 220 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 396
+++E + T SH++NM++GV F Y+++ Y HFP+ V EGN +I + NFLGEK
Sbjct: 60 TRREKRLINTWRSHIKNMLEGVQNPFVYRLKVCYTHFPMR-VKLEGNKLI-VENFLGEK 116
>UniRef50_O05637 Cluster: 50S ribosomal protein L6P; n=8;
Thermoprotei|Rep: 50S ribosomal protein L6P - Sulfolobus
acidocaldarius
Length = 189
Score = 83.4 bits (197), Expect = 2e-15
Identities = 40/129 (31%), Positives = 81/129 (62%), Gaps = 1/129 (0%)
Frame = +1
Query: 40 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRM-VNPRLLKVEKWF 216
+K ++++IPD + V +++ ++ VKGP+G + ++F + A IR+ +N + +E F
Sbjct: 4 LKAAYIREEIQIPDKVKVSLENNVLKVKGPKGEVIKDFSY-AKGIRIQLNEGKIILETTF 62
Query: 217 GSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 396
+++ A + ++ +H++NMI G G++Y ++ + HFPI+ V G+ +++ N +GEK
Sbjct: 63 ADRRKKALLYSIIAHIKNMITGTINGYRYYLKVISTHFPIS-VKVSGDE-VQVSNLIGEK 120
Query: 397 YIRRVKMAP 423
IRR K+ P
Sbjct: 121 NIRRAKILP 129
>UniRef50_O28370 Cluster: 50S ribosomal protein L6P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L6P -
Archaeoglobus fulgidus
Length = 196
Score = 80.6 bits (190), Expect = 1e-14
Identities = 48/129 (37%), Positives = 76/129 (58%), Gaps = 5/129 (3%)
Frame = +1
Query: 46 QIVANQKVKIPDGLTVHVKS---RLVTVK--GPRGVLKRNFKHLAVDIRMVNPRLLKVEK 210
++ + V++P+ + + ++ R T+K GP+G R K+ V I + + ++ +V
Sbjct: 17 EVYEERVVEVPEDVQLTIEGDSFRGYTLKAVGPKGENTRYLKYRGVFIEVGDGKV-RVYT 75
Query: 211 WFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLG 390
KK A V T H+EN+I GV +GF+Y ++ VYAHFPI V EGN +I I NF+G
Sbjct: 76 TSPKKKHKAMVGTFAGHIENLITGVKEGFEYHLKVVYAHFPIK-VRVEGNEVI-IENFIG 133
Query: 391 EKYIRRVKM 417
EK+ RR K+
Sbjct: 134 EKHPRRAKI 142
>UniRef50_Q3LWE8 Cluster: Ribosomal protein L9; n=1; Bigelowiella
natans|Rep: Ribosomal protein L9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 190
Score = 79.4 bits (187), Expect = 3e-14
Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
Frame = +1
Query: 40 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI--RMVNPRLLKVEKW 213
MK ++ + +P + + +K + + KG G L + F + V+I + + L V +
Sbjct: 1 MKHVLVQSIINVPKDVKIRIKEKTIYTKGINGELSKKFNNKNVNIIYKKNDSNSLIVRCY 60
Query: 214 FGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGE 393
+ +K A VRT+ S + NMI GV+KGF Y ++ VY+HFPI+ + + +EI N G
Sbjct: 61 YNNKSSSAIVRTITSIIYNMIIGVSKGFTYLLKIVYSHFPISVKYIQNENTLEITNLFGL 120
Query: 394 KYI 402
K I
Sbjct: 121 KRI 123
>UniRef50_Q673R2 Cluster: 50S ribosomal protein L6P; n=2;
environmental samples|Rep: 50S ribosomal protein L6P -
uncultured marine group II euryarchaeote DeepAnt-JyKC7
Length = 188
Score = 76.6 bits (180), Expect = 2e-13
Identities = 44/120 (36%), Positives = 66/120 (55%)
Frame = +1
Query: 64 KVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAV 243
K+ +P+G+T V VTV L R F+H +++R + L +V KKE A
Sbjct: 10 KISLPEGVTAAVNGNDVTVAKDGNSLTREFRHPRIEVRDSSGEL-EVFVNLPRKKEKALA 68
Query: 244 RTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAP 423
T +H+ NM +GV GF+YK++AVY+HFP+ + GN + + N GEK + RV P
Sbjct: 69 GTWAAHLTNMARGVDSGFEYKLKAVYSHFPMT-IRVNGNQ-MTVTNLFGEK-VPRVAALP 125
>UniRef50_A2GN76 Cluster: Ribosomal protein L6, putative; n=2;
Trichomonas vaginalis G3|Rep: Ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 197
Score = 75.8 bits (178), Expect = 3e-13
Identities = 42/125 (33%), Positives = 67/125 (53%), Gaps = 7/125 (5%)
Frame = +1
Query: 43 KQIVANQKVKIPDGLTVHVKSRLVTVK--GPR----GVLKRNFKHLAVDIRM-VNPRLLK 201
+ ++ + KIP+ + VKS +VT++ P+ L ++ HL +D N +
Sbjct: 3 RPVLHQEHFKIPENIKCTVKSGVVTIEHQDPKDKKTSKLVKDLSHLKLDFEYDENDHQIV 62
Query: 202 VEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 381
WFG++K LA + T+ V+NMI GVT G++YKM VY+HFPI +E +
Sbjct: 63 ARCWFGNRKLLARIGTLFGIVKNMITGVTLGWRYKMHFVYSHFPIKHTCSEDGRTFDFNG 122
Query: 382 FLGEK 396
F+G K
Sbjct: 123 FMGHK 127
>UniRef50_Q8ZVA7 Cluster: 50S ribosomal protein L6P; n=5;
Thermoproteaceae|Rep: 50S ribosomal protein L6P -
Pyrobaculum aerophilum
Length = 196
Score = 75.8 bits (178), Expect = 3e-13
Identities = 41/124 (33%), Positives = 77/124 (62%), Gaps = 5/124 (4%)
Frame = +1
Query: 40 MKQIVANQKVKIPDGLTVHVKSR-----LVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKV 204
M+ + + ++V+IP G++V ++ +V VKGP G + + FK+ V + + + +++ +
Sbjct: 1 MRVVYSVEEVEIPKGVSVSIERTGPFDYIVKVKGPLGEVTKEFKNTPVVMSLQDGKIV-M 59
Query: 205 EKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNF 384
E + K+E A + T ++NM GVT+G++YK++ +Y HFP+ V +GN ++ I NF
Sbjct: 60 EVFKARKREYAILGTYKGILKNMFLGVTRGWRYKLKVIYTHFPM-LVKVQGNQLV-IENF 117
Query: 385 LGEK 396
LG K
Sbjct: 118 LGRK 121
>UniRef50_UPI0000DA3DDB Cluster: PREDICTED: similar to 60S ribosomal
protein L9; n=3; Euarchontoglires|Rep: PREDICTED:
similar to 60S ribosomal protein L9 - Rattus norvegicus
Length = 145
Score = 72.5 bits (170), Expect = 3e-12
Identities = 30/40 (75%), Positives = 37/40 (92%)
Frame = +1
Query: 226 KELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCV 345
KELA VRT+CSHV+NMIKGV+ GF+YK+R+VYAHFP+N V
Sbjct: 30 KELATVRTICSHVQNMIKGVSLGFRYKVRSVYAHFPLNVV 69
>UniRef50_P14135 Cluster: 50S ribosomal protein L6P; n=5;
Halobacteriaceae|Rep: 50S ribosomal protein L6P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 178
Score = 72.1 bits (169), Expect = 4e-12
Identities = 39/115 (33%), Positives = 66/115 (57%)
Frame = +1
Query: 64 KVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAV 243
+++IP+ + +TV+G G + R + +D+ V+ + +E + K ++ +
Sbjct: 5 ELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVS-VDGDTVVIESDEDNAKTMSTI 63
Query: 244 RTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRR 408
T SH+ENM GVT+G++Y M Y+HFP+ V EG+ ++ I NFLGEK RR
Sbjct: 64 GTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQ-VNVEGDEVV-IENFLGEKAPRR 116
>UniRef50_A7DSX9 Cluster: Ribosomal protein L6; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L6
- Candidatus Nitrosopumilus maritimus SCM1
Length = 185
Score = 71.7 bits (168), Expect = 6e-12
Identities = 37/111 (33%), Positives = 67/111 (60%)
Frame = +1
Query: 64 KVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAV 243
+V+IP+G+TV ++ +GP G +NF+++ V I + + ++ ++ K++ A +
Sbjct: 12 QVEIPEGVTVTQNKNMLLFEGPLGKTHKNFRNIPVKIEIADGKV-NLKTIGERKRDYAIL 70
Query: 244 RTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 396
T S + N+ +G+ +G+ KM+ V+AHFPI V EG I+ I NF GE+
Sbjct: 71 HTARSIIRNICEGLVEGYTIKMKVVFAHFPIT-VKVEGKKIL-IENFQGER 119
>UniRef50_Q8TW14 Cluster: 50S ribosomal protein L6P; n=3; cellular
organisms|Rep: 50S ribosomal protein L6P - Methanopyrus
kandleri
Length = 204
Score = 70.5 bits (165), Expect = 1e-11
Identities = 38/124 (30%), Positives = 70/124 (56%), Gaps = 5/124 (4%)
Frame = +1
Query: 49 IVANQKVKIPDGLTVHVKSRL-----VTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKW 213
IV ++VKI D + + + R VTVKGP+G + + F + V + + + ++ +
Sbjct: 17 IVMEERVKIKDDVEIEISQREDRRYEVTVKGPKGEVTKEFYYPDVYLWVEDDEVV-IAAT 75
Query: 214 FGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGE 393
++++ A + + +++ENM KGVT+G +YK++ VY+HFP + + I NF+GE
Sbjct: 76 RSNRRQKAILGMIKAYIENMQKGVTEGHEYKLKLVYSHFPPEVKVDQKEGKVYIENFMGE 135
Query: 394 KYIR 405
R
Sbjct: 136 NVPR 139
>UniRef50_Q97BW0 Cluster: 50S ribosomal protein L6P; n=1;
Thermoplasma volcanium|Rep: 50S ribosomal protein L6P -
Thermoplasma volcanium
Length = 178
Score = 62.9 bits (146), Expect = 3e-09
Identities = 34/117 (29%), Positives = 66/117 (56%)
Frame = +1
Query: 67 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVR 246
++IP + V + ++++ L++ F V + +V +K+ K + +E V
Sbjct: 10 IEIPKDVKVGLSGTMLSMTFGNKKLEKKFADNYVRL-LVEDNKIKIVKSKNNSRERGIVG 68
Query: 247 TVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKM 417
T S + NM+KG+ +GFQY+M+ Y+HFP+ V+ +G +++ I NF GE+ R ++
Sbjct: 69 TWASEISNMVKGLKEGFQYEMKIDYSHFPMR-VSVKGKTVV-IENFFGERSPRTAEI 123
>UniRef50_A0RVY9 Cluster: Ribosomal protein L6P/L9E; n=1;
Cenarchaeum symbiosum|Rep: Ribosomal protein L6P/L9E -
Cenarchaeum symbiosum
Length = 165
Score = 62.5 bits (145), Expect = 3e-09
Identities = 38/105 (36%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Frame = +1
Query: 106 RLVTVKGPRGVLKRNFKHLAVDIRMVNPRL-LKVEKWFGSKKELAAVRTVCSHVENMIKG 282
R++ VKG G ++F+ + V IR+ + LK E K++LA + T S V N+ +G
Sbjct: 8 RMLHVKGKLGSAHKSFRKIPVGIRIDGSSVVLKAEGT--RKRDLAILNTARSIVRNLCEG 65
Query: 283 VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKM 417
V G+ K++ VYAHFPI + +G ++I + NF GE+ R+ K+
Sbjct: 66 VGVGYTIKLKVVYAHFPIT-IKQDG-AMILVENFQGERSARKAKI 108
>UniRef50_Q6L1B1 Cluster: 50S ribosomal protein L6P; n=3;
Thermoplasmatales|Rep: 50S ribosomal protein L6P -
Picrophilus torridus
Length = 180
Score = 61.7 bits (143), Expect = 6e-09
Identities = 37/118 (31%), Positives = 63/118 (53%)
Frame = +1
Query: 64 KVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAV 243
++K+PD + +++ + +KG G R F+ V + +K+ +K V
Sbjct: 9 EIKLPDDVQATMENNELKIKGKLGEASRIFRDNYVKA-YIEGSSVKIATSKNNKYTKGIV 67
Query: 244 RTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKM 417
T S + +I+GVTKGF+Y M+ + HFP+ V+ G+ +I + NFLGEK R K+
Sbjct: 68 GTWYSETKLLIEGVTKGFEYHMKIDFTHFPMR-VSVRGDKLI-VENFLGEKSPRSAKI 123
>UniRef50_UPI000021E22B Cluster: PREDICTED: similar to ribosomal
protein L9; n=2; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein L9 - Rattus norvegicus
Length = 77
Score = 60.1 bits (139), Expect = 2e-08
Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Frame = +1
Query: 40 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL--LKVEKW 213
M+ I NQ VKIP+ + +V VK RG L+R+F H+ +++R++ R L+V+KW
Sbjct: 1 MRIIHINQAVKIPEN------AHIVIVKDTRGTLQRDFNHINIELRLLAKRKKQLQVDKW 54
Query: 214 FGSKKELAAVRTVCSHVENMIKGV 285
+ K LA T+ SHV+NMIK V
Sbjct: 55 LKTMK-LATAHTIYSHVQNMIKRV 77
>UniRef50_Q6E6D2 Cluster: Large subunit ribosomal protein L9e; n=1;
Antonospora locustae|Rep: Large subunit ribosomal
protein L9e - Antonospora locustae (Nosema locustae)
Length = 160
Score = 56.0 bits (129), Expect = 3e-07
Identities = 34/129 (26%), Positives = 66/129 (51%), Gaps = 2/129 (1%)
Frame = +1
Query: 40 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKH--LAVDIRMVNPRLLKVEKW 213
MK+++ +KV+IP+G +V + R++TV+G R R+ H L +D+ + RL ++
Sbjct: 1 MKRLLCEEKVEIPEGCSVEILERVMTVRGKRATAVRDLSHFVLTMDVHEGHVRL----RY 56
Query: 214 FGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGE 393
+++ VC +N I G G++Y +R + F +G +++ ++NFL
Sbjct: 57 GMAQQGAQQADYVCICDQNCIVGCMSGYEYTLRLCTSTFNERSDRDDGKTVV-VKNFLDR 115
Query: 394 KYIRRVKMA 420
+ K A
Sbjct: 116 SMLGDTKCA 124
>UniRef50_A4M9T7 Cluster: 50S ribosomal protein L6; n=3;
Thermotogaceae|Rep: 50S ribosomal protein L6 - Petrotoga
mobilis SJ95
Length = 186
Score = 53.2 bits (122), Expect = 2e-06
Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 6/92 (6%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNF-KHLAVDIRMVNPRLLK----VEKWF 216
+A++ IPDG+ + V + + +KG G L N ++L VD R N ++K V K
Sbjct: 6 IADKPTIIPDGVELSVDGQTIKIKGKNGELSLNLPEYLEVD-RDNNELMIKTKEGVVKRS 64
Query: 217 GSKKELAAVR-TVCSHVENMIKGVTKGFQYKM 309
+K L A+R T SHV NMIKGVT+G++ ++
Sbjct: 65 SDEKRLKALRGTFTSHVRNMIKGVTEGYKKEL 96
>UniRef50_Q48D51 Cluster: 50S ribosomal protein L6; n=6;
Proteobacteria|Rep: 50S ribosomal protein L6 -
Pseudomonas syringae pv. phaseolicola (strain 1448A /
Race 6)
Length = 179
Score = 52.8 bits (121), Expect = 3e-06
Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPR-LLKVEKWFGSKK 228
VA VK+P G+ V + +L++VKGP+G L+ H +V++ +V L+ G ++
Sbjct: 4 VAKNPVKLPSGVEVKLVGQLLSVKGPKGTLEL-IIHSSVEVEIVEEAGELRFAARNGDQQ 62
Query: 229 ELAAVRTVCSHVENMIKGVTKGFQYKMRAV 318
A T + V NM++GV++GF+ K++ V
Sbjct: 63 TRAMAGTTRALVNNMVQGVSQGFERKLQLV 92
>UniRef50_Q661C7 Cluster: 50S ribosomal protein L6; n=9; cellular
organisms|Rep: 50S ribosomal protein L6 - Borrelia
garinii
Length = 180
Score = 51.2 bits (117), Expect = 8e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Frame = +1
Query: 67 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVR 246
+KIPD + + VK LV V+G RG L ++ K ++++++ N ++ V + F KK A
Sbjct: 9 IKIPDTVKIDVKGNLVIVEGTRGKLVQDIKD-SINVKVENGSVI-VNRAFNDKKTKAYHG 66
Query: 247 TVCSHVENMIKGVTKGF 297
S + NM+KGVT+GF
Sbjct: 67 LYRSLIFNMVKGVTEGF 83
>UniRef50_UPI0000DA368E Cluster: PREDICTED: similar to 60S ribosomal
protein L9; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to 60S ribosomal protein L9 - Rattus norvegicus
Length = 92
Score = 50.8 bits (116), Expect = 1e-05
Identities = 22/54 (40%), Positives = 36/54 (66%)
Frame = +1
Query: 256 SHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKM 417
+H+++ + GF Y+MR+VYA FP N + E S+IE + +G+KYI RV++
Sbjct: 21 NHLQSCSEHDQGGFHYRMRSVYAGFPTNVIIQENGSVIEHWSAMGKKYIHRVQI 74
>UniRef50_Q8ETW8 Cluster: 50S ribosomal protein L6; n=40;
Bacteria|Rep: 50S ribosomal protein L6 - Oceanobacillus
iheyensis
Length = 178
Score = 50.8 bits (116), Expect = 1e-05
Identities = 30/89 (33%), Positives = 49/89 (55%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKE 231
V + V+IP+G+ + + + VTVKGP+G L R H + I + +L VE+ K+
Sbjct: 4 VGLKPVEIPEGVELKLDNNTVTVKGPKGELSREL-HPDMKIN-IEDNVLTVERPSDHKEH 61
Query: 232 LAAVRTVCSHVENMIKGVTKGFQYKMRAV 318
A T S + NM+ GV+KGF+ + +
Sbjct: 62 RALHGTTRSLINNMVIGVSKGFEKSLEII 90
>UniRef50_A0BWM5 Cluster: Chromosome undetermined scaffold_132,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_132,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 167
Score = 46.4 bits (105), Expect = 2e-04
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 9/72 (12%)
Frame = +1
Query: 106 RLVTVKGPRGVLKRNFKHLAVDIRMVNP-------RLLKVE--KWFGSKKELAAVRTVCS 258
+L+ + GPRG+L RNFKH ++DI++ L+K+E K+ V+++ +
Sbjct: 53 KLIMIIGPRGILNRNFKHASLDIQVQKEIKEIKQIGLIKIEYQDVVQYSKQRFQVKSIAA 112
Query: 259 HVENMIKGVTKG 294
++NMI+G+T G
Sbjct: 113 QIKNMIRGITSG 124
>UniRef50_Q9ZAE4 Cluster: 50S ribosomal protein L6; n=4; cellular
organisms|Rep: 50S ribosomal protein L6 - Thermotoga
maritima
Length = 184
Score = 46.4 bits (105), Expect = 2e-04
Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNF-KHLAVDIR----MVNPRLLKVEKWF 216
+A + + +P G+TV +K +V VKGP+G L + F ++ +++ V P ++ +
Sbjct: 4 LAKKPIVLPQGVTVEIKDNVVKVKGPKGELSQEFLPYVKIEVEGNEVWVRPNEEQIIRKS 63
Query: 217 GSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAV 318
+K T S + NM+ GVT+G++ ++ V
Sbjct: 64 DWRKVKMFQGTYWSLIRNMVVGVTEGYKKELEIV 97
>UniRef50_Q8R7W9 Cluster: 50S ribosomal protein L6; n=22;
Bacteria|Rep: 50S ribosomal protein L6 -
Thermoanaerobacter tengcongensis
Length = 180
Score = 46.0 bits (104), Expect = 3e-04
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +1
Query: 67 VKIPDGLTVHVK-SRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAV 243
+ IP G+ V V +VTVKG +G L++ F + V+I + + ++ K K+E A
Sbjct: 9 IPIPKGVEVKVSPDNVVTVKGAKGTLEKKFPPI-VNIEVRDGEVVVTRKG-DDKEERAMH 66
Query: 244 RTVCSHVENMIKGVTKGFQYKMRAV 318
T + + NM+KGVT+GF+ + V
Sbjct: 67 GTTRAIIANMVKGVTEGFEKALEIV 91
>UniRef50_P46898 Cluster: 50S ribosomal protein L6; n=7;
Bacilli|Rep: 50S ribosomal protein L6 - Bacillus
subtilis
Length = 179
Score = 46.0 bits (104), Expect = 3e-04
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVK-SRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKK 228
V + ++IP +TV + + V VKGP+G L R F H ++I+ V +L V + K+
Sbjct: 4 VGKKLLEIPSDVTVTLNDNNTVAVKGPKGELTRTF-HPDMEIK-VEDNVLTVARPSDQKE 61
Query: 229 ELAAVRTVCSHVENMIKGVTKGFQYKMRAV 318
A T S + NM++GV+KGF+ + V
Sbjct: 62 HRALHGTTRSLLGNMVEGVSKGFERGLELV 91
>UniRef50_A5GIT1 Cluster: 50S ribosomal protein L6; n=7;
Bacteria|Rep: 50S ribosomal protein L6 - Synechococcus
sp. (strain WH7803)
Length = 179
Score = 45.2 bits (102), Expect = 6e-04
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKE 231
+ + IPD ++V + VTVKGP+G LKR V + V+ ++ K++
Sbjct: 4 IGKSPIPIPDKVSVSLDGLAVTVKGPKGELKRTLPD-GVTVNQVDNTIVVAPT--SEKRQ 60
Query: 232 LAAVRTVC-SHVENMIKGVTKGFQYKMRAV 318
+C + V NMI+GV+KG+ K+ V
Sbjct: 61 SRERHGLCRTLVANMIEGVSKGYSKKLEIV 90
>UniRef50_Q847P4 Cluster: 50S ribosomal protein L6; n=1; Aster
yellows phytoplasma|Rep: 50S ribosomal protein L6 -
Aster yellows phytoplasma
Length = 175
Score = 44.0 bits (99), Expect = 0.001
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-NPRLLKVEKWFGSKK 228
+ N V IP+ + V + ++ +KGP G L + + DI ++ N + V++ KK
Sbjct: 12 IGNIPVLIPNNVFVKKQDNIIYIKGPLGKLNQE---IIGDINIIINHNNIIVKRKHNDKK 68
Query: 229 ELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEI 375
A + NMIKGV+ GF+ K+ + F N + N I+ +
Sbjct: 69 NRALHGLYRMLIYNMIKGVSNGFKKKLELIGVGFRAN-INNNNNQILNL 116
>UniRef50_Q83ER1 Cluster: 50S ribosomal protein L6; n=108;
Proteobacteria|Rep: 50S ribosomal protein L6 - Coxiella
burnetii
Length = 178
Score = 44.0 bits (99), Expect = 0.001
Identities = 30/86 (34%), Positives = 43/86 (50%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKE 231
VA +KIP G+ V+V + +TVKG G L R H AV + + L + S
Sbjct: 5 VAKNPIKIPTGVEVNVAGQQITVKGKLGTLTRVI-HRAVKVTKTDAELQTICA-NDSPGS 62
Query: 232 LAAVRTVCSHVENMIKGVTKGFQYKM 309
A T + + NM++GV GFQ K+
Sbjct: 63 NALAGTARAVLANMVQGVHTGFQRKL 88
>UniRef50_Q6YR07 Cluster: 50S ribosomal protein L6; n=16;
Firmicutes|Rep: 50S ribosomal protein L6 - Onion yellows
phytoplasma
Length = 184
Score = 43.2 bits (97), Expect = 0.002
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSR-LVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKK 228
V N+ +++P+ + V +K R ++V+GP+G L+ F H + + N + K +
Sbjct: 4 VGNKAIEVPNAVKVDIKDRNFISVEGPKGKLEYQFNHR---LTITNENKVITVKRPNDEI 60
Query: 229 ELAAVR-TVCSHVENMIKGVTKGFQYKMRAV 318
+ + T + + NM++GV+KGFQ ++ V
Sbjct: 61 FMKKIHGTTRALLSNMVEGVSKGFQKTLKIV 91
>UniRef50_A5LSZ6 Cluster: 50S ribosomal protein L6; n=1;
Streptococcus pneumoniae SP9-BS68|Rep: 50S ribosomal
protein L6 - Streptococcus pneumoniae SP9-BS68
Length = 139
Score = 41.5 bits (93), Expect = 0.007
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKE 231
+ N+ + +P G+ + +VTVKGP+G L R F ++IR V + + + SK+
Sbjct: 4 IGNKVIVLPAGVELANNDNVVTVKGPKGELTREFSK-DIEIR-VEGTEITLHRPNDSKEM 61
Query: 232 LAAVRTVCSHVENMIKGVTKGF--QYKMRAV 318
T + + NM+ GV++GF + +MR V
Sbjct: 62 KTIHGTTRALLNNMVVGVSEGFKKELEMRGV 92
>UniRef50_Q0ID19 Cluster: 50S ribosomal protein L6; n=6;
Bacteria|Rep: 50S ribosomal protein L6 - Synechococcus
sp. (strain CC9311)
Length = 179
Score = 41.1 bits (92), Expect = 0.009
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKE 231
+ + IPD + V + VTVKGP+G LKR V + V+ ++ +K+
Sbjct: 4 IGKNPIPIPDKVNVTLSGLAVTVKGPKGELKRTLPS-GVSVNQVDNSIVVAPT--STKRS 60
Query: 232 LAAVRTVC-SHVENMIKGVTKGFQYKMRAV 318
+C + V NM+ GV++G+ K+ V
Sbjct: 61 SRERHGLCRTLVANMVIGVSQGYSKKLEIV 90
>UniRef50_Q8A491 Cluster: 50S ribosomal protein L6; n=34;
Bacteria|Rep: 50S ribosomal protein L6 - Bacteroides
thetaiotaomicron
Length = 189
Score = 40.7 bits (91), Expect = 0.012
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Frame = +1
Query: 67 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVE---KWFGSKKELA 237
+ IP G+TV +K +VTVKGP+G L + + + A+++ + + + E + + K+
Sbjct: 9 ISIPAGVTVTLKDDVVTVKGPKGELSQ-YVNPAINVAIEDGHVTLTENEKEMIDNPKQKH 67
Query: 238 AVRTVC-SHVENMIKGVTKGFQYKMRAV 318
A + S V NM+ GV++G++ ++ V
Sbjct: 68 AFHGLYRSLVHNMVVGVSEGYKKELELV 95
>UniRef50_Q2JIL3 Cluster: 50S ribosomal protein L6; n=44; cellular
organisms|Rep: 50S ribosomal protein L6 - Synechococcus
sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria
bacteriumYellowstone B-Prime)
Length = 181
Score = 40.3 bits (90), Expect = 0.016
Identities = 22/90 (24%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKE 231
+ + + +P + + + + + VKGP+G L R+ L + ++ N ++L V + +
Sbjct: 4 IGRRPIALPAKVEIQIDGQHIAVKGPKGQLSRSLPPL-ITVQQ-NAQMLTVSR-LNDSRP 60
Query: 232 LAAVRTVC-SHVENMIKGVTKGFQYKMRAV 318
+ +C + V NM+ GV+KGF+ ++ V
Sbjct: 61 ARQLHGLCRTLVANMVDGVSKGFERRLELV 90
>UniRef50_Q9ZCS0 Cluster: 50S ribosomal protein L6; n=10;
Rickettsieae|Rep: 50S ribosomal protein L6 - Rickettsia
prowazekii
Length = 177
Score = 40.3 bits (90), Expect = 0.016
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFK-HLAVDIRMVNPRLLKVEKWFGSKK 228
V + IP+G+ V + V + GP+G L + FK ++A+ ++ L V+ +K
Sbjct: 4 VGKLPITIPEGVKVGLNDLEVKISGPKGELSKTFKGNIAI---IMEENKLVVKPLAVNKN 60
Query: 229 ELAAVRTVCSHVENMIKGVTKGFQYKM 309
A T S + NMI GV +GF+ K+
Sbjct: 61 ARAMWGTARSIICNMITGVKEGFKLKL 87
>UniRef50_Q9RSL3 Cluster: 50S ribosomal protein L6; n=65; cellular
organisms|Rep: 50S ribosomal protein L6 - Deinococcus
radiodurans
Length = 185
Score = 39.9 bits (89), Expect = 0.021
Identities = 24/82 (29%), Positives = 44/82 (53%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKE 231
+ Q + +P G+TV+ + + VKGP+G L + + + +R +LL VE+ ++K
Sbjct: 4 IGKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPY-NTELTVRQDGDQLL-VERPSDAQKH 61
Query: 232 LAAVRTVCSHVENMIKGVTKGF 297
A + V N +KGV+ G+
Sbjct: 62 RALHGLTRTLVANAVKGVSDGY 83
>UniRef50_Q3ZZN4 Cluster: 50S ribosomal protein L6; n=7;
Bacteria|Rep: 50S ribosomal protein L6 - Dehalococcoides
sp. (strain CBDB1)
Length = 182
Score = 39.9 bits (89), Expect = 0.021
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKE 231
+ +K+P G+ V + VTVKGP+G L R+F+ V I L+ G+ K
Sbjct: 4 IGKMPIKVPPGIKVDINGNDVTVKGPKGTLSRSFRP-EVTINREGDYLVVAP--VGTDKA 60
Query: 232 LAAVRTVC-SHVENMIKGVTKGFQYKMRAV 318
+ + + ++NMI GV GF + V
Sbjct: 61 TRSFFGLSRTLLDNMIVGVKDGFDKNLEIV 90
>UniRef50_Q7VQD3 Cluster: 50S ribosomal subunit protein L6; n=2;
Candidatus Blochmannia|Rep: 50S ribosomal subunit
protein L6 - Blochmannia floridanus
Length = 181
Score = 39.5 bits (88), Expect = 0.028
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Frame = +1
Query: 40 MKQIVANQKVK-IPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWF 216
M+QI + + IP+ + + ++ + V G G L F H + ++ N + L V +
Sbjct: 1 MEQISGYKSIICIPNEIQITIQDCCILVVGVLGNLSYKF-HNFIGVQFSNVKNLIVYSRY 59
Query: 217 GSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAV 318
+ A + T CS + +MI GVT+GF K++ +
Sbjct: 60 RNHVNRALLGTTCSLINSMIVGVTEGFVKKLQLI 93
>UniRef50_Q6KI40 Cluster: 50S ribosomal protein l6; n=4;
Mycoplasma|Rep: 50S ribosomal protein l6 - Mycoplasma
mobile
Length = 179
Score = 39.5 bits (88), Expect = 0.028
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHL-AVDIRMVNPRLLKVEKWFGSKK 228
V + + +P + +++K+ LV +KG GVL N L A+++ + ++ + K
Sbjct: 4 VGRRVLTLPKDVELNIKNNLVEIKGKLGVLTFNVNPLIAIEVENHEVKTIRANE---EKH 60
Query: 229 ELAAVRTVCSHVENMIKGVTKGFQYKM 309
T S +ENMI GV+KGF+ ++
Sbjct: 61 TKQLHGTTNSIIENMIIGVSKGFKKEL 87
>UniRef50_Q9A8T8 Cluster: 50S ribosomal protein L6; n=16;
Bacteria|Rep: 50S ribosomal protein L6 - Caulobacter
crescentus (Caulobacter vibrioides)
Length = 177
Score = 39.5 bits (88), Expect = 0.028
Identities = 26/89 (29%), Positives = 42/89 (47%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKE 231
+ + V IP G+ V + + VTVKGP+G L V+++ LL + +K+
Sbjct: 4 IGKKAVAIPSGVQVTLAGQTVTVKGPKGQLSWTIAD-EVEVKQEGAELLLAPR-VDTKRA 61
Query: 232 LAAVRTVCSHVENMIKGVTKGFQYKMRAV 318
+ V NM+ GVT GF+ + V
Sbjct: 62 KGMWGLSRTLVANMVHGVTVGFEESLELV 90
>UniRef50_O23049 Cluster: 50S ribosomal protein L6, chloroplast
precursor; n=8; Magnoliophyta|Rep: 50S ribosomal protein
L6, chloroplast precursor - Arabidopsis thaliana
(Mouse-ear cress)
Length = 223
Score = 39.5 bits (88), Expect = 0.028
Identities = 21/86 (24%), Positives = 44/86 (51%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKE 231
+ Q + +P +T+ ++ + + VKGP G L + V++ L+V+K +++
Sbjct: 46 IGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPR-EVELTKEESGFLRVKKTVETRRA 104
Query: 232 LAAVRTVCSHVENMIKGVTKGFQYKM 309
+ +NM+ GV+KGF+ K+
Sbjct: 105 NQMHGLFRTLTDNMVVGVSKGFEKKL 130
>UniRef50_Q8KAI6 Cluster: 50S ribosomal protein L6; n=15;
Bacteria|Rep: 50S ribosomal protein L6 - Chlorobium
tepidum
Length = 179
Score = 39.1 bits (87), Expect = 0.037
Identities = 25/86 (29%), Positives = 40/86 (46%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKE 231
+ +++ D V VK ++ V GP+G L + I V + V++ SK+
Sbjct: 4 IGKMPIRLADQAQVEVKENMINVTGPKGALSQALVDEV--IVSVADGAVTVQRKDDSKRA 61
Query: 232 LAAVRTVCSHVENMIKGVTKGFQYKM 309
A V NM++GVTKGF K+
Sbjct: 62 RAMHGLYRMLVSNMVEGVTKGFTRKL 87
>UniRef50_Q98PZ7 Cluster: 50S ribosomal protein L6; n=29;
Bacteria|Rep: 50S ribosomal protein L6 - Mycoplasma
pulmonis
Length = 179
Score = 38.7 bits (86), Expect = 0.048
Identities = 26/87 (29%), Positives = 44/87 (50%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKE 231
V + ++IP G V + VKG G L R F V+I+ N + + VE+ K
Sbjct: 4 VGKRIIQIPSGTEVKIDGSFFEVKGKLGSLSRLFSPF-VNIKHENNQ-ISVERLNELKPT 61
Query: 232 LAAVRTVCSHVENMIKGVTKGFQYKMR 312
T + + NM+KGV++GF+ +++
Sbjct: 62 KQLHGTTNALIANMVKGVSEGFKKELK 88
>UniRef50_Q9ZI38 Cluster: 50S ribosomal protein L6; n=2; Aquifex
pyrophilus|Rep: 50S ribosomal protein L6 - Aquifex
pyrophilus
Length = 187
Score = 38.3 bits (85), Expect = 0.064
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +1
Query: 100 KSRLVTVKGPRGVLKRNFKHLAVDIRM-VNPRLLKVEKWFGSKKELAAVRTVCSHVENMI 276
K VTV+GP+G L+ N H + + + R +K+++ A T+ + ++NMI
Sbjct: 22 KEHKVTVEGPKGKLELNI-HPDIKVTLNQQERWIKLDRPSDRSFHKAIHGTMAALIKNMI 80
Query: 277 KGVTKGF 297
KGVT+GF
Sbjct: 81 KGVTEGF 87
>UniRef50_Q7UN05 Cluster: 50S ribosomal protein L6; n=3;
Planctomycetaceae|Rep: 50S ribosomal protein L6 -
Rhodopirellula baltica
Length = 181
Score = 37.9 bits (84), Expect = 0.085
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKH-----LAVDIRMVNPRLLKVEKWF 216
+ N+ V IP G+TV + R + V+GP+G K +FKH +AVD N ++ +
Sbjct: 4 IGNKPVAIPSGVTVSIADRNIDVEGPKG--KLSFKHRPEVKVAVD-SDTNQVIVSRDGDD 60
Query: 217 GSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAV 318
+E + V NM+ GV G++ K+ V
Sbjct: 61 RPSREFHGLTRAI--VANMLVGVKDGYEKKLEIV 92
>UniRef50_O67565 Cluster: 50S ribosomal protein L6; n=1; Aquifex
aeolicus|Rep: 50S ribosomal protein L6 - Aquifex
aeolicus
Length = 183
Score = 37.9 bits (84), Expect = 0.085
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHV--KSRLVTVKGPRGVLKRNFKHLAVDIRM-VNPRLLKVEKWFGS 222
+A + + P+ + V+ K + V+GP+G L+ N H + + + R +K+++
Sbjct: 4 LAKKPIPYPENVKVNYVEKEHKIVVEGPKGKLELNV-HPDIKVTVNQQERWIKLDRPTDR 62
Query: 223 KKELAAVRTVCSHVENMIKGVTKGF 297
A T+ + V+NMIKGVT+GF
Sbjct: 63 SFHKAIHGTMAALVKNMIKGVTEGF 87
>UniRef50_Q8DML8 Cluster: 50S ribosomal protein L6; n=4; cellular
organisms|Rep: 50S ribosomal protein L6 - Synechococcus
elongatus (Thermosynechococcus elongatus)
Length = 187
Score = 36.7 bits (81), Expect = 0.20
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKE 231
+ + + +P +T+ + + VTVKGP+G L R F ++ +V V K +
Sbjct: 4 IGKRPIPLPKNVTLTLDGQQVTVKGPKGQLSRVF---PPEVNVVQEGEAIVVKRRDDSRP 60
Query: 232 LAAVRTVC-SHVENMIKGVTKGFQYKM 309
+C + + NM++GV++GF K+
Sbjct: 61 AKERHGLCRTLLANMVEGVSQGFTKKL 87
>UniRef50_Q6Q8X3 Cluster: 50S ribosomal protein L6; n=6;
Proteobacteria|Rep: 50S ribosomal protein L6 -
uncultured marine gamma proteobacterium EBAC20E09
Length = 182
Score = 35.9 bits (79), Expect = 0.34
Identities = 22/90 (24%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKH-LAVDIRMVNPRLLKVEKWFGSKK 228
VA + IP+ + + + +V VKG +G L +++D V +++ ++ +++
Sbjct: 4 VAKNPITIPENVDLSINENVVIVKGSKGELDFVLPDTISLD---VADKVITIKYDEENQQ 60
Query: 229 ELAAVRTVCSHVENMIKGVTKGFQYKMRAV 318
+A T S + NM+ GV++GF+ K+ +
Sbjct: 61 SVALAGTSRSLINNMVIGVSEGFEKKLELI 90
>UniRef50_Q1XDI8 Cluster: Chloroplast 50S ribosomal protein L6; n=4;
cellular organisms|Rep: Chloroplast 50S ribosomal
protein L6 - Porphyra yezoensis
Length = 180
Score = 35.9 bits (79), Expect = 0.34
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKE 231
+ + + +P L+ + +TV GP+G L R +++ ++N + K G K
Sbjct: 4 IGKKIILLPTNLSTQFDGQTITVTGPKGTLSRTLP-AGINLEILNDTI--AVKTSGQTKM 60
Query: 232 LAAVRTVC-SHVENMIKGVTKGFQYKMR 312
+ + + + + NMI+GV+ GF K++
Sbjct: 61 ASQLHGLSRTLISNMIEGVSNGFFKKLQ 88
>UniRef50_Q6E783 Cluster: Ribosomal protein L6; n=5; Oomycetes|Rep:
Ribosomal protein L6 - Saprolegnia ferax
Length = 204
Score = 35.1 bits (77), Expect = 0.60
Identities = 19/84 (22%), Positives = 40/84 (47%)
Frame = +1
Query: 58 NQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELA 237
++K++IP + + +K + ++GP G + N H N LL +K+ +
Sbjct: 30 HEKIRIPKNINIVLKKNQLILQGPLGSIDLNIMHSLNYFIKNNNILLSFNSLHLKRKKKS 89
Query: 238 AVRTVCSHVENMIKGVTKGFQYKM 309
+ S ++ IKG+ +GF+ +
Sbjct: 90 FLNLYKSLIKLKIKGILQGFKLNL 113
>UniRef50_Q1ZBZ7 Cluster: 50S ribosomal protein L6; n=1;
Psychromonas sp. CNPT3|Rep: 50S ribosomal protein L6 -
Psychromonas sp. CNPT3
Length = 128
Score = 34.7 bits (76), Expect = 0.79
Identities = 24/83 (28%), Positives = 42/83 (50%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKE 231
+A + + G+ V V + +T+KG +G L R AV +++ + ++ G K
Sbjct: 4 IAKAPITVLAGVEVKVNGQEITLKGGKGELVRTLND-AVVVKLEDG-VITFAPVEGIKDA 61
Query: 232 LAAVRTVCSHVENMIKGVTKGFQ 300
A T ++V NM+ GVT GF+
Sbjct: 62 WAQAGTARANVNNMMIGVTTGFK 84
>UniRef50_A0YJS9 Cluster: 50S ribosomal protein L6; n=2; cellular
organisms|Rep: 50S ribosomal protein L6 - Lyngbya sp.
PCC 8106
Length = 181
Score = 34.7 bits (76), Expect = 0.79
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKE 231
+ + + IP +T ++ + + VKGP+G L R + + + L+K ++
Sbjct: 4 IGKRPIPIPPKVTFTIEGQHIIVKGPKGELSRVLPEKVILEQDGDTLLVKRRDESRVARQ 63
Query: 232 LAAV-RTVCSHVENMIKGVTKGFQYKM 309
L + RT+ V NM+ GV+KGF+ ++
Sbjct: 64 LHGLSRTL---VANMVDGVSKGFEKRL 87
>UniRef50_Q11HR7 Cluster: 50S ribosomal protein L6; n=73;
Proteobacteria|Rep: 50S ribosomal protein L6 -
Mesorhizobium sp. (strain BNC1)
Length = 177
Score = 34.7 bits (76), Expect = 0.79
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLK 144
+ + V +P G+T +V ++VT KGP+G LK
Sbjct: 4 IGKKPVPVPQGVTANVDGQVVTAKGPKGELK 34
>UniRef50_Q4QI55 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 946
Score = 34.3 bits (75), Expect = 1.0
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = -3
Query: 278 LIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTA--KCLKFLLRTPRGPLTVTRR 105
L +F+ C ++V+ A+S L P+H + R GF + TA + FL R PL + R
Sbjct: 22 LELFAACRESVVHVAASHLLPDHVAVTTRNGFVELIDTATGEFRLFLTYLDRIPLDASLR 81
Query: 104 DFT 96
F+
Sbjct: 82 CFS 84
>UniRef50_O21255 Cluster: Mitochondrial 60S ribosomal protein L6;
n=1; Reclinomonas americana|Rep: Mitochondrial 60S
ribosomal protein L6 - Reclinomonas americana
Length = 185
Score = 33.9 bits (74), Expect = 1.4
Identities = 22/95 (23%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-NPRLLKVEKW-FGSK 225
+ ++++KIP +++ + + V+G G L+ ++ + ++ + N + L ++ G+K
Sbjct: 4 IGSKQIKIPKNVSIDLSMNKIYVRGDLGKLELPLNNINIHLKNIENDQFLILDPINTGTK 63
Query: 226 KELAAV----RTVCSHVENMIKGVTKGFQYKMRAV 318
K+ A T + +ENM+ GV+KG+ + V
Sbjct: 64 KQKTASYIMWGTYRTLIENMLIGVSKGYSKTIELV 98
>UniRef50_Q5FM76 Cluster: 50S ribosomal protein L6; n=10;
Firmicutes|Rep: 50S ribosomal protein L6 - Lactobacillus
acidophilus
Length = 176
Score = 33.9 bits (74), Expect = 1.4
Identities = 22/84 (26%), Positives = 44/84 (52%)
Frame = +1
Query: 67 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVR 246
+++PD +TV + +TVKGP+G L R F + N + + S+ + A
Sbjct: 9 IEVPDSVTVTKEGDNITVKGPKGELTRYFDPKITFEQ--NDGEINFSR--SSESDKALHG 64
Query: 247 TVCSHVENMIKGVTKGFQYKMRAV 318
T +++ +MI+GV G++ ++ +
Sbjct: 65 TERANLASMIEGVLNGYKKTLKLI 88
>UniRef50_Q7NEG7 Cluster: 50S ribosomal protein L6; n=19;
Bacteria|Rep: 50S ribosomal protein L6 - Gloeobacter
violaceus
Length = 191
Score = 33.9 bits (74), Expect = 1.4
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +1
Query: 67 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG--SKKELAA 240
+ IP + V + R V VKGP+G L +V++ + RLL + ++++
Sbjct: 9 IAIPPKVEVTLDGRRVVVKGPKGTLDLTLPD-SVEVVREDGRLLVTRRGESRRAREQHGL 67
Query: 241 VRTVCSHVENMIKGVTKGFQYKMR 312
RT+ V NM+ GVT GF M+
Sbjct: 68 GRTL---VANMVTGVTTGFTKPMQ 88
>UniRef50_Q4G353 Cluster: Chloroplast 50S ribosomal protein L6; n=2;
Eukaryota|Rep: Chloroplast 50S ribosomal protein L6 -
Emiliania huxleyi
Length = 181
Score = 33.9 bits (74), Expect = 1.4
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKR---NFKHLAVDIRMVNPRLLKVEKWFGS 222
+ Q + IPD + + ++ + V V GP+G L R +F +D L K E+ S
Sbjct: 4 IGKQYISIPDKVNIRLEGQKVFVDGPKGKLTRILPSFICCTIDEPEKKVFLEKAEENKLS 63
Query: 223 KKELAAVRTVCSHVENMIKGVTKGFQYKM 309
+ RT+ S NM+ GV+ G+ K+
Sbjct: 64 QALYGLSRTLLS---NMVTGVSSGWHKKL 89
>UniRef50_A6W8A5 Cluster: Putative uncharacterized protein; n=2;
Actinomycetales|Rep: Putative uncharacterized protein -
Kineococcus radiotolerans SRS30216
Length = 275
Score = 33.5 bits (73), Expect = 1.8
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +1
Query: 1 AAGIRHEGQQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNF 153
A G E Q P ++++ V+ DG T H +R V V GPR L+ F
Sbjct: 149 AQGGAAEEQDGPLGRELLCRLPVRTEDGRTAHQPTRFVGVDGPRWFLRAVF 199
>UniRef50_A6DRC5 Cluster: 50S ribosomal protein L6; n=1;
Lentisphaera araneosa HTCC2155|Rep: 50S ribosomal
protein L6 - Lentisphaera araneosa HTCC2155
Length = 181
Score = 33.5 bits (73), Expect = 1.8
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFK---HLAVDIRMVNPRLLKVEKWFGS 222
+ N+ + I G+ V + + V+VKGP+G LK +VD + + + S
Sbjct: 4 IGNKAISITAGVEVKISGKEVSVKGPKGELKHTLTPRVEASVDADSNEVVVTRQDDSRFS 63
Query: 223 KKELAAVRTVCSHVENMIKGVTKGFQYKM 309
K E R++ + NMI GV+ G++ ++
Sbjct: 64 KAEHGLNRSL---ISNMIVGVSTGWKKEL 89
>UniRef50_P47412 Cluster: 50S ribosomal protein L6; n=6;
Mycoplasmataceae|Rep: 50S ribosomal protein L6 -
Mycoplasma genitalium
Length = 184
Score = 33.1 bits (72), Expect = 2.4
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Frame = +1
Query: 52 VANQKVKI-PDGLTVHVKSRLVTVKGPRGVLKRNF-KHLAVDIRMVNPRLLKVEKWFGSK 225
+ N+ +KI P +++ + L+T+KGP G K+L + + N + KV K
Sbjct: 4 IGNRSIKIDPSKVSLMQTTTLLTIKGPLGENTIKLPKNLPLKFVVENDTI-KVTNNNNLK 62
Query: 226 KELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPIN 339
+ T + V N + GVTKGF+ K+ V + N
Sbjct: 63 QTKILHGTFNALVNNAVIGVTKGFEKKLILVGVGYRAN 100
>UniRef50_Q74L75 Cluster: 50S ribosomal protein L6; n=7;
Bacteria|Rep: 50S ribosomal protein L6 - Lactobacillus
johnsonii
Length = 176
Score = 33.1 bits (72), Expect = 2.4
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +1
Query: 67 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-NPRLLKVEKWFGSKKELAAV 243
+++P+ +TV +TVKGP+G L R F D R+ + ++ S+ + A
Sbjct: 9 IEVPEKVTVTKNGDDITVKGPKGELTRYF-----DPRITFEQKDGEIHFSRSSEADKALH 63
Query: 244 RTVCSHVENMIKGVTKGFQYKMRAV 318
T +++ +MI+GVT G+ K+ V
Sbjct: 64 GTERANLASMIEGVTDGYVKKLTLV 88
>UniRef50_Q2IJ73 Cluster: 50S ribosomal protein L6; n=6;
Bacteria|Rep: 50S ribosomal protein L6 -
Anaeromyxobacter dehalogenans (strain 2CP-C)
Length = 180
Score = 33.1 bits (72), Expect = 2.4
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHL-AVDIRMVNPRLLKVEKWFGSKK 228
V VKIP+ + V V +V V+GP+G + L +V + ++ + ++ +K
Sbjct: 4 VGKMPVKIPEKVKVSVDGNVVKVEGPKGKMHFPTNPLVSVQVDKGEVKVARQDESHVAKG 63
Query: 229 ELAAVRTVCSHVENMIKGVTKGFQ 300
RT+ V+N ++GV KG++
Sbjct: 64 LHGLTRTL---VKNALEGVVKGYE 84
>UniRef50_UPI000049A156 Cluster: ankyrin; n=9; Entamoeba histolytica
HM-1:IMSS|Rep: ankyrin - Entamoeba histolytica HM-1:IMSS
Length = 866
Score = 32.7 bits (71), Expect = 3.2
Identities = 20/75 (26%), Positives = 35/75 (46%)
Frame = +1
Query: 148 NFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAH 327
+F LAVD ++N +L+K + ++K + T+ HV +K + G Y Y
Sbjct: 683 DFPELAVDDEILNKKLIKYNNEWNAQKRMEIFSTIVGHVGEHVKMI--GPFYCNFGRYIS 740
Query: 328 FPINCVTTEGNSIIE 372
NC+ +I+E
Sbjct: 741 IGDNCIINFNCTILE 755
>UniRef50_UPI00015A3C61 Cluster: vomeronasal 2 receptor 635; n=26;
Monodelphis domestica|Rep: vomeronasal 2 receptor 635 -
Monodelphis domestica
Length = 862
Score = 31.9 bits (69), Expect = 5.6
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = -3
Query: 218 PNHFSTFRRRGFTMRMSTAKCLKFL--LRTPRGPLTVTRRDFTWTVSPSGILTF*FATIC 45
P+ F+ + F+M + + + FL ++ +G + V F+ VS +GILT FA C
Sbjct: 782 PDTFNEAKYLTFSMLVFCSVWISFLPAYQSTKGKVMVAMEIFSILVSSAGILTCIFAPKC 841
Query: 44 FMFGLC 27
++ LC
Sbjct: 842 YVILLC 847
>UniRef50_Q9W0Q1 Cluster: CG17090-PA, isoform A; n=6; Eumetazoa|Rep:
CG17090-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 1340
Score = 31.9 bits (69), Expect = 5.6
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +3
Query: 33 PKHEANCSKSESQNPRRAYGPCEIASGDS*RAPRSSQKELQTLGC*HSHGKPSSP 197
PKH N +++ + A+ IA G+S R PR +KE Q L K SSP
Sbjct: 728 PKHHLNLPRNDLKKESPAH---HIAKGNSYRVPRHEKKEHQQLSPVKKRVKESSP 779
>UniRef50_Q9G865 Cluster: Ribosomal protein L6; n=1; Malawimonas
jakobiformis|Rep: Ribosomal protein L6 - Malawimonas
jakobiformis
Length = 172
Score = 31.9 bits (69), Expect = 5.6
Identities = 23/89 (25%), Positives = 41/89 (46%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKE 231
+ + IP+ + + + ++ + V G GVL + +++ N RL F K
Sbjct: 4 IGKNPIMIPNNVKIEIINKYLIVIGNLGVLIKKMPD-TIELLKSNNRL------FIKTKN 56
Query: 232 LAAVRTVCSHVENMIKGVTKGFQYKMRAV 318
+ T + NM+ GV+KGF K+R V
Sbjct: 57 FSLWGTYRMLINNMVIGVSKGFIIKLRLV 85
>UniRef50_Q7Q7P3 Cluster: DNA polymerase; n=6; Eukaryota|Rep: DNA
polymerase - Anopheles gambiae str. PEST
Length = 2225
Score = 31.9 bits (69), Expect = 5.6
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +1
Query: 292 GFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKY 399
G +YK +YA + + +T +GNS+ E+ FLG+KY
Sbjct: 86 GSRYKTTVIYAPYLL-LITRDGNSL-EVAKFLGKKY 119
>UniRef50_Q9XD21 Cluster: 50S ribosomal protein L6; n=36; cellular
organisms|Rep: 50S ribosomal protein L6 - Leptospira
interrogans
Length = 179
Score = 31.9 bits (69), Expect = 5.6
Identities = 20/83 (24%), Positives = 44/83 (53%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKE 231
+ ++K+PD + V ++ + VKGP G L + ++ N ++K+E+ +K
Sbjct: 4 IGKAEIKLPDKVEVKQENANIKVKGPLGELFTPIFE-GISVKTEN-GIVKLERSNEDQKV 61
Query: 232 LAAVRTVCSHVENMIKGVTKGFQ 300
+A + + N +KGV++G++
Sbjct: 62 VALHGLTRALLMNCVKGVSQGWE 84
>UniRef50_A5WFU5 Cluster: Pyruvate oxidase; n=1; Psychrobacter sp.
PRwf-1|Rep: Pyruvate oxidase - Psychrobacter sp. PRwf-1
Length = 603
Score = 31.5 bits (68), Expect = 7.4
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 82 GLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKW 213
G TVH L +V + R+ K + VDI++ N RLL VE++
Sbjct: 519 GFTVHKAEELESVLQQAQQVTRSGKPVLVDIKITNERLLPVEQF 562
>UniRef50_Q0P3I5 Cluster: Mitochondrion, complete genome; n=1;
Ostreococcus tauri|Rep: Mitochondrion, complete genome -
Ostreococcus tauri
Length = 187
Score = 31.5 bits (68), Expect = 7.4
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 40 MKQI-VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKH 159
MK I + Q V +P +TVHV + +GP G + N H
Sbjct: 1 MKSISITKQSVVVPSTITVHVADSTLRFEGPLGKISVNLAH 41
>UniRef50_Q0CCB3 Cluster: Putative uncharacterized protein; n=1;
Aspergillus terreus NIH2624|Rep: Putative
uncharacterized protein - Aspergillus terreus (strain
NIH 2624)
Length = 468
Score = 31.5 bits (68), Expect = 7.4
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -2
Query: 96 MDRKPVWDFDFLICYNLLHVWALLTLV--PNS 7
MD PVW FLIC + VW ++ LV PNS
Sbjct: 176 MDSFPVWRGVFLICGGITVVWGVILLVFLPNS 207
>UniRef50_P27316 Cluster: RNA-directed RNA polymerase; n=63;
Phlebovirus|Rep: RNA-directed RNA polymerase - Rift
valley fever virus (strain ZH-548 M12) (RVFV)
Length = 2149
Score = 31.5 bits (68), Expect = 7.4
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = +1
Query: 184 NPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNS 363
+P L +KWFG++K T + E +K + K + A AH P+ N+
Sbjct: 1524 SPEKLVSDKWFGTQKSRIGKTTFLAEWEK-LKKIVKWLEDAPEATLAHTPL-------NN 1575
Query: 364 IIEIRNF 384
I++RNF
Sbjct: 1576 HIQVRNF 1582
>UniRef50_UPI000067342D Cluster: COG2909: ATP-dependent
transcriptional regulator; n=1; Shigella dysenteriae
1012|Rep: COG2909: ATP-dependent transcriptional
regulator - Shigella dysenteriae 1012
Length = 169
Score = 31.1 bits (67), Expect = 9.7
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 136 VLKRNFKHLAVDIRMVNPRLLKVEKW-FGSKKELAAVRTVCSHVENMIKGVTKGFQY-KM 309
+L+ + K L D + NP+L+ ++ W S+ V T+ + E+ IK + +G + +
Sbjct: 41 LLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREGTMHAEF 100
Query: 310 RAVYAHFPIN 339
A+ A IN
Sbjct: 101 NALRAQVAIN 110
>UniRef50_Q7WZS2 Cluster: 50S ribosomal protein L6; n=1; Candidatus
Portiera aleyrodidarum|Rep: 50S ribosomal protein L6 -
Candidatus Portiera aleyrodidarum
Length = 176
Score = 31.1 bits (67), Expect = 9.7
Identities = 26/86 (30%), Positives = 42/86 (48%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKE 231
+A +K+P+ + + + +V V G G L + K +V I +L+ K KK+
Sbjct: 4 IAKCPIKVPNNVEILLDKEVVIVIGNNGRLFLS-KPSSVVIVKDQQKLIFNSK----KKD 58
Query: 232 LAAVRTVCSHVENMIKGVTKGFQYKM 309
T+ + V NMI GV KGF K+
Sbjct: 59 WVITGTIRALVNNMIIGVYKGFTRKL 84
>UniRef50_Q26CC0 Cluster: Putative uncharacterized protein; n=1;
Flavobacteria bacterium BBFL7|Rep: Putative
uncharacterized protein - Flavobacteria bacterium BBFL7
Length = 221
Score = 31.1 bits (67), Expect = 9.7
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -2
Query: 348 GDTVNGEVSIHSTHLVLEAFSYSFNHVLYM*TDCPHGGKLLFGSEPFLNLQETRVYHANV 169
GD V E ++S+ Y F++ L++ HG LF + F + TRV H +V
Sbjct: 158 GDRVEIEGKVNSSFAATAGLGYDFDNGLFIKATYAHGITDLFDNVDFSKDERTRVAHFSV 217
>UniRef50_Q8WTL7 Cluster: Putative uncharacterized protein; n=1;
Caenorhabditis elegans|Rep: Putative uncharacterized
protein - Caenorhabditis elegans
Length = 2460
Score = 31.1 bits (67), Expect = 9.7
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Frame = +1
Query: 157 HLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVC---SHVENMIKGVT--KGFQYKMRAVY 321
H+ D++++ + ++ WF ++L ++RT C S ++ I +T KGF + M+A +
Sbjct: 361 HVKHDVKIILTKETCMDIWFMRGEQLESIRTRCGPLSSLDMSILWITTEKGFYWNMKAEF 420
Query: 322 AHF 330
+F
Sbjct: 421 LNF 423
>UniRef50_A5K579 Cluster: Putative uncharacterized protein; n=3;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium vivax
Length = 2784
Score = 31.1 bits (67), Expect = 9.7
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 109 LVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTV 252
L+ K VLK+ + L ++I N + K+E W K+L+A V
Sbjct: 752 LIDTKTQNDVLKKEVERLKMEIEKKNHEIKKIENWNDLTKKLSAENVV 799
>UniRef50_P41843 Cluster: Uncharacterized protein T20B12.3; n=2;
Caenorhabditis|Rep: Uncharacterized protein T20B12.3 -
Caenorhabditis elegans
Length = 504
Score = 31.1 bits (67), Expect = 9.7
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -3
Query: 290 LVTPLIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCL 153
L P +++ + ++++LT SFL H T+ F R+S +CL
Sbjct: 275 LTNPSLLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318
>UniRef50_Q2S3P9 Cluster: 50S ribosomal protein L6; n=1;
Salinibacter ruber DSM 13855|Rep: 50S ribosomal protein
L6 - Salinibacter ruber (strain DSM 13855)
Length = 184
Score = 31.1 bits (67), Expect = 9.7
Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSR-LVTVKGPRGVLKRNFK-HLAVDIRMVNPRLLKVEKWFGSK 225
+ + + D +TV V +VT++GP+G L + +DI + + V + K
Sbjct: 4 IGDNPIPFGDEVTVSVDDHNVVTIEGPKGTLTEQIDPEMTLDIADDH---VVVRRPTNQK 60
Query: 226 KELAAVRTVCSHVENMIKGVTKGFQYKMRAV 318
+ + S + NM++GVT+G++ +++ +
Sbjct: 61 RHRSLHGLSRSLIVNMVEGVTEGYKKELKII 91
>UniRef50_Q63XR8 Cluster: Error-prone DNA polymerase; n=22;
Burkholderiales|Rep: Error-prone DNA polymerase -
Burkholderia pseudomallei (Pseudomonas pseudomallei)
Length = 1072
Score = 31.1 bits (67), Expect = 9.7
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 112 VTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAA 240
V+ PRG L+ K L VD +V R+ K +WF ++L A
Sbjct: 433 VSTYRPRGALRETGKALGVDPMLVE-RVAKEHRWFDGSRDLLA 474
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 448,225,727
Number of Sequences: 1657284
Number of extensions: 8873486
Number of successful extensions: 22233
Number of sequences better than 10.0: 100
Number of HSP's better than 10.0 without gapping: 21695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22176
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 19810951153
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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