BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NRPG0214 (424 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044 160 5e-40 02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17... 153 7e-38 03_06_0712 - 35683814-35684065,35685296-35685466 27 4.7 12_02_0870 - 23852923-23853228,23853416-23853728,23853813-238539... 27 6.2 07_03_1082 - 23834840-23835928,23836879-23836974,23837739-23837930 27 6.2 03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164... 27 8.2 01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001 27 8.2 01_06_0826 - 32252546-32253208 27 8.2 >09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044 Length = 190 Score = 160 bits (388), Expect = 5e-40 Identities = 72/127 (56%), Positives = 101/127 (79%), Gaps = 1/127 (0%) Frame = +1 Query: 40 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-RLLKVEKWF 216 MK I+A++ ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++ R L+V+ WF Sbjct: 1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60 Query: 217 GSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 396 G+++ +AA+RT SHV+N+I GVTKG++YKMR VYAHFPIN T N+ IEIRNFLGEK Sbjct: 61 GTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEK 120 Query: 397 YIRRVKM 417 +R+V M Sbjct: 121 KVRKVDM 127 >02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-178126, 178260-178322,178964-179167,180605-180687,182394-182516, 182987-183328 Length = 543 Score = 153 bits (370), Expect = 7e-38 Identities = 69/120 (57%), Positives = 94/120 (78%), Gaps = 3/120 (2%) Frame = +1 Query: 67 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP---RLLKVEKWFGSKKELA 237 ++IP G+TVHV +++VTV+GPRG L RNFKHL +D +++ R L+V+ WFG+++ +A Sbjct: 1 MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60 Query: 238 AVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKM 417 A+RT SHV+N+I GVTKG++YKMR VYAHFPIN T N+ IEIRNFLGEK +R+V M Sbjct: 61 AIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDM 120 >03_06_0712 - 35683814-35684065,35685296-35685466 Length = 140 Score = 27.5 bits (58), Expect = 4.7 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%) Frame = +1 Query: 136 VLKRNF-KHLAVDIRMVNPRLLKVE 207 VLKR+F + AVD+R +NP++ K E Sbjct: 5 VLKRHFSRKRAVDVRRINPKVPKEE 29 >12_02_0870 - 23852923-23853228,23853416-23853728,23853813-23853938, 23854038-23854243,23854311-23854443,23854607-23854688, 23854785-23854914,23855034-23855126,23855211-23855333, 23855786-23855977,23858230-23858394,23858697-23858768, 23858826-23858945,23859873-23859949,23860032-23860398, 23860738-23861871 Length = 1212 Score = 27.1 bits (57), Expect = 6.2 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +1 Query: 16 HEGQQSPNMKQIVANQKVKIPDG 84 HE +S N KQ++ K IP+G Sbjct: 303 HESSESENDKQLLTENKTSIPNG 325 >07_03_1082 - 23834840-23835928,23836879-23836974,23837739-23837930 Length = 458 Score = 27.1 bits (57), Expect = 6.2 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Frame = +1 Query: 100 KSRLVTVKGPRGVLKRNFKH-LAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMI 276 K ++ GP G +K K+ + +NPRL K+ + KKEL V S+V M+ Sbjct: 143 KDEVLYKAGPFGTVKAIRKNPTVIPDESINPRLAKILQQVAIKKEL-IVALANSNVREML 201 Query: 277 K 279 + Sbjct: 202 E 202 >03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318, 1643433-1643600,1643683-1643843,1643930-1643991, 1644078-1644127,1644247-1644653,1644760-1644895 Length = 444 Score = 26.6 bits (56), Expect = 8.2 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +1 Query: 67 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI 174 VKI D T+ V +L+ V R LK + L +DI Sbjct: 135 VKIVDDQTISVDGKLIKVVSNRDPLKLPWAELGIDI 170 >01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001 Length = 1472 Score = 26.6 bits (56), Expect = 8.2 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +1 Query: 73 IPDGLTVHVKSRLVTVKGPRGVLKRN 150 +P G T H +S + V+GPRG + N Sbjct: 61 LPRGATSHRESGISAVRGPRGRIGEN 86 >01_06_0826 - 32252546-32253208 Length = 220 Score = 26.6 bits (56), Expect = 8.2 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = +3 Query: 57 KSESQNPRRAYGPCEIASGDS*RAPRSSQKELQTLG 164 + E ++ RRA+G E G PR Q+ L LG Sbjct: 150 EEEREDLRRAFGAFEAVKGSGRITPRGLQRVLSQLG 185 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,127,153 Number of Sequences: 37544 Number of extensions: 248207 Number of successful extensions: 582 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 576 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 580 length of database: 14,793,348 effective HSP length: 75 effective length of database: 11,977,548 effective search space used: 778540620 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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