Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0214
(424 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044 160 5e-40
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17... 153 7e-38
03_06_0712 - 35683814-35684065,35685296-35685466 27 4.7
12_02_0870 - 23852923-23853228,23853416-23853728,23853813-238539... 27 6.2
07_03_1082 - 23834840-23835928,23836879-23836974,23837739-23837930 27 6.2
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164... 27 8.2
01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001 27 8.2
01_06_0826 - 32252546-32253208 27 8.2
>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
Length = 190
Score = 160 bits (388), Expect = 5e-40
Identities = 72/127 (56%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Frame = +1
Query: 40 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-RLLKVEKWF 216
MK I+A++ ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++ R L+V+ WF
Sbjct: 1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60
Query: 217 GSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 396
G+++ +AA+RT SHV+N+I GVTKG++YKMR VYAHFPIN T N+ IEIRNFLGEK
Sbjct: 61 GTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEK 120
Query: 397 YIRRVKM 417
+R+V M
Sbjct: 121 KVRKVDM 127
>02_01_0029 -
176002-176137,176495-176646,177166-177577,178010-178126,
178260-178322,178964-179167,180605-180687,182394-182516,
182987-183328
Length = 543
Score = 153 bits (370), Expect = 7e-38
Identities = 69/120 (57%), Positives = 94/120 (78%), Gaps = 3/120 (2%)
Frame = +1
Query: 67 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP---RLLKVEKWFGSKKELA 237
++IP G+TVHV +++VTV+GPRG L RNFKHL +D +++ R L+V+ WFG+++ +A
Sbjct: 1 MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60
Query: 238 AVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKM 417
A+RT SHV+N+I GVTKG++YKMR VYAHFPIN T N+ IEIRNFLGEK +R+V M
Sbjct: 61 AIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDM 120
>03_06_0712 - 35683814-35684065,35685296-35685466
Length = 140
Score = 27.5 bits (58), Expect = 4.7
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +1
Query: 136 VLKRNF-KHLAVDIRMVNPRLLKVE 207
VLKR+F + AVD+R +NP++ K E
Sbjct: 5 VLKRHFSRKRAVDVRRINPKVPKEE 29
>12_02_0870 -
23852923-23853228,23853416-23853728,23853813-23853938,
23854038-23854243,23854311-23854443,23854607-23854688,
23854785-23854914,23855034-23855126,23855211-23855333,
23855786-23855977,23858230-23858394,23858697-23858768,
23858826-23858945,23859873-23859949,23860032-23860398,
23860738-23861871
Length = 1212
Score = 27.1 bits (57), Expect = 6.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 16 HEGQQSPNMKQIVANQKVKIPDG 84
HE +S N KQ++ K IP+G
Sbjct: 303 HESSESENDKQLLTENKTSIPNG 325
>07_03_1082 - 23834840-23835928,23836879-23836974,23837739-23837930
Length = 458
Score = 27.1 bits (57), Expect = 6.2
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 100 KSRLVTVKGPRGVLKRNFKH-LAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMI 276
K ++ GP G +K K+ + +NPRL K+ + KKEL V S+V M+
Sbjct: 143 KDEVLYKAGPFGTVKAIRKNPTVIPDESINPRLAKILQQVAIKKEL-IVALANSNVREML 201
Query: 277 K 279
+
Sbjct: 202 E 202
>03_01_0208 +
1642041-1642118,1642200-1642310,1643157-1643318,
1643433-1643600,1643683-1643843,1643930-1643991,
1644078-1644127,1644247-1644653,1644760-1644895
Length = 444
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 67 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI 174
VKI D T+ V +L+ V R LK + L +DI
Sbjct: 135 VKIVDDQTISVDGKLIKVVSNRDPLKLPWAELGIDI 170
>01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001
Length = 1472
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 73 IPDGLTVHVKSRLVTVKGPRGVLKRN 150
+P G T H +S + V+GPRG + N
Sbjct: 61 LPRGATSHRESGISAVRGPRGRIGEN 86
>01_06_0826 - 32252546-32253208
Length = 220
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 57 KSESQNPRRAYGPCEIASGDS*RAPRSSQKELQTLG 164
+ E ++ RRA+G E G PR Q+ L LG
Sbjct: 150 EEEREDLRRAFGAFEAVKGSGRITPRGLQRVLSQLG 185
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,127,153
Number of Sequences: 37544
Number of extensions: 248207
Number of successful extensions: 582
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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