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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0214
         (424 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    160   5e-40
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   153   7e-38
03_06_0712 - 35683814-35684065,35685296-35685466                       27   4.7  
12_02_0870 - 23852923-23853228,23853416-23853728,23853813-238539...    27   6.2  
07_03_1082 - 23834840-23835928,23836879-23836974,23837739-23837930     27   6.2  
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164...    27   8.2  
01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001     27   8.2  
01_06_0826 - 32252546-32253208                                         27   8.2  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  160 bits (388), Expect = 5e-40
 Identities = 72/127 (56%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
 Frame = +1

Query: 40  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-RLLKVEKWF 216
           MK I+A++ ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++   R L+V+ WF
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60

Query: 217 GSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 396
           G+++ +AA+RT  SHV+N+I GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK
Sbjct: 61  GTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEK 120

Query: 397 YIRRVKM 417
            +R+V M
Sbjct: 121 KVRKVDM 127


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  153 bits (370), Expect = 7e-38
 Identities = 69/120 (57%), Positives = 94/120 (78%), Gaps = 3/120 (2%)
 Frame = +1

Query: 67  VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP---RLLKVEKWFGSKKELA 237
           ++IP G+TVHV +++VTV+GPRG L RNFKHL +D +++     R L+V+ WFG+++ +A
Sbjct: 1   MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60

Query: 238 AVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKM 417
           A+RT  SHV+N+I GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M
Sbjct: 61  AIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDM 120


>03_06_0712 - 35683814-35684065,35685296-35685466
          Length = 140

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +1

Query: 136 VLKRNF-KHLAVDIRMVNPRLLKVE 207
           VLKR+F +  AVD+R +NP++ K E
Sbjct: 5   VLKRHFSRKRAVDVRRINPKVPKEE 29


>12_02_0870 -
           23852923-23853228,23853416-23853728,23853813-23853938,
           23854038-23854243,23854311-23854443,23854607-23854688,
           23854785-23854914,23855034-23855126,23855211-23855333,
           23855786-23855977,23858230-23858394,23858697-23858768,
           23858826-23858945,23859873-23859949,23860032-23860398,
           23860738-23861871
          Length = 1212

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 16  HEGQQSPNMKQIVANQKVKIPDG 84
           HE  +S N KQ++   K  IP+G
Sbjct: 303 HESSESENDKQLLTENKTSIPNG 325


>07_03_1082 - 23834840-23835928,23836879-23836974,23837739-23837930
          Length = 458

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 100 KSRLVTVKGPRGVLKRNFKH-LAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMI 276
           K  ++   GP G +K   K+   +    +NPRL K+ +    KKEL  V    S+V  M+
Sbjct: 143 KDEVLYKAGPFGTVKAIRKNPTVIPDESINPRLAKILQQVAIKKEL-IVALANSNVREML 201

Query: 277 K 279
           +
Sbjct: 202 E 202


>03_01_0208 +
           1642041-1642118,1642200-1642310,1643157-1643318,
           1643433-1643600,1643683-1643843,1643930-1643991,
           1644078-1644127,1644247-1644653,1644760-1644895
          Length = 444

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 67  VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI 174
           VKI D  T+ V  +L+ V   R  LK  +  L +DI
Sbjct: 135 VKIVDDQTISVDGKLIKVVSNRDPLKLPWAELGIDI 170


>01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001
          Length = 1472

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 73  IPDGLTVHVKSRLVTVKGPRGVLKRN 150
           +P G T H +S +  V+GPRG +  N
Sbjct: 61  LPRGATSHRESGISAVRGPRGRIGEN 86


>01_06_0826 - 32252546-32253208
          Length = 220

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 57  KSESQNPRRAYGPCEIASGDS*RAPRSSQKELQTLG 164
           + E ++ RRA+G  E   G     PR  Q+ L  LG
Sbjct: 150 EEEREDLRRAFGAFEAVKGSGRITPRGLQRVLSQLG 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,127,153
Number of Sequences: 37544
Number of extensions: 248207
Number of successful extensions: 582
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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