Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0214
(424 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 171 2e-43
SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82) 29 1.2
SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_44616| Best HMM Match : rve (HMM E-Value=0.012) 28 2.8
SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7) 28 2.8
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30) 28 3.7
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_2047| Best HMM Match : Ependymin (HMM E-Value=6e-05) 27 6.4
SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7) 27 8.5
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 171 bits (416), Expect = 2e-43
Identities = 75/128 (58%), Positives = 100/128 (78%)
Frame = +1
Query: 40 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 219
MK I+A++ V IPD + V VKSR+VTV GPRG LKRNF+HL +++ V ++V+ WF
Sbjct: 557 MKTILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKDKVRVDVWFA 616
Query: 220 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKY 399
S+KELA V+T+ +H+ENMIKGV G++YKMRAVYAHFPIN E +++E+RNFLGEKY
Sbjct: 617 SRKELACVKTIITHIENMIKGVIYGYRYKMRAVYAHFPINIAIQENGTLVEVRNFLGEKY 676
Query: 400 IRRVKMAP 423
+RRV+M P
Sbjct: 677 VRRVRMRP 684
>SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)
Length = 883
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 25 QQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRG 135
Q + +K++ + K K DG+ VH K+ TV+ PRG
Sbjct: 99 QNAKRIKKLEEDLKKKTCDGVLVHRKAVAATVEEPRG 135
>SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 201 LQETRVYHANVNSQVFEVPFENSAGPFNCHQ 109
L TR+ + V+S EV E S P++CHQ
Sbjct: 160 LYNTRIPNVTVSSDGGEVELEISDDPYDCHQ 190
>SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 28.7 bits (61), Expect = 2.1
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 254 QTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVT 111
QT++T A F D RRR F+ +S C + L R+P P++ T
Sbjct: 85 QTMITTA--FPDTRKSPLTRRRNFSDGVSDLSCTENLARSPCAPVSPT 130
>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
Length = 1189
Score = 28.3 bits (60), Expect = 2.8
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +1
Query: 70 KIPDGLTVHVKSRLVTVKGPRG---VLKRNFKHL-AVDIRMVNPRLLKV 204
K+ DGL VH+ ++ V K P+ + KR + L A+ I + +P + KV
Sbjct: 4 KLDDGLRVHIVTQYVLFKNPKKLEIIAKRQKETLEALQINLDHPHVAKV 52
>SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7)
Length = 197
Score = 28.3 bits (60), Expect = 2.8
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Frame = -2
Query: 192 TRVYHANVNSQVFEVP-------FENSAGPFNCHQTRFHMDRKP 82
TR YH NV VF V F S G N HQ + DR+P
Sbjct: 57 TRSYHENVVRPVFGVSDYWYRYEFAKSRGQINRHQLSWREDRQP 100
>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1427
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 54 SKSESQNPRRAYGPCEIASGDS*RAPRS--SQKELQTL 161
S+ ++ R Y PC I SG++ APR +KE++ L
Sbjct: 1363 SEDDTTTGARRYRPCPIESGNTYEAPRQVVMEKEVEEL 1400
>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
Length = 1152
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 97 VKSRLVTVKGPRGVLKRNFKHL 162
V++R TV PRG L+RN +HL
Sbjct: 1069 VETRSYTVSTPRGELRRNRRHL 1090
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 27.1 bits (57), Expect = 6.4
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 223 KKELAAVRTVCSHVENMIKGVTKGFQY-KMRAVYAHFPI--NCVTTEGNSIIE 372
K+ LAA + V + N+ KGVT+G K R V PI V T+G + +
Sbjct: 948 KRALAAAKVVKTERVNVAKGVTQGMPVTKGRVVTQGMPITPGRVVTQGKVVTQ 1000
>SB_2047| Best HMM Match : Ependymin (HMM E-Value=6e-05)
Length = 739
Score = 27.1 bits (57), Expect = 6.4
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Frame = -2
Query: 150 VPFENS-AGPFNCHQTRFHMD--RKPVW---DFDFLICYNLLH 40
+PF GP +C +TRF +D R P W D+ L+C +++
Sbjct: 6 IPFNALIVGPTSCGKTRFVVDRLRGPFWVKFDYILLVCPTIVY 48
>SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 26.6 bits (56), Expect = 8.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 360 ITLSGDTVNGEVSIHSTHLVLEAFSYSF 277
+T+ D G VS H+THLV A S ++
Sbjct: 173 LTIHTDHEGGNVSAHTTHLVGSALSDAY 200
>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2480
Score = 26.6 bits (56), Expect = 8.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -2
Query: 150 VPFENS-AGPFNCHQTRFHMD--RKPVWDFDFLIC 55
+PF GP +C +TRF +D R P D+ L+C
Sbjct: 712 IPFNALIVGPTSCGKTRFIVDRLRGPFLDYIVLVC 746
>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
Length = 828
Score = 26.6 bits (56), Expect = 8.5
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Frame = -2
Query: 192 TRVYHANVNSQVFEV-------PFENSAGPFNCHQTRFHMDRKP 82
TR YH NV VF V F S G + HQ + DR+P
Sbjct: 108 TRSYHKNVVKLVFGVNDYWYRYEFAKSRGQIHWHQLSWREDRQP 151
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,169,613
Number of Sequences: 59808
Number of extensions: 290988
Number of successful extensions: 795
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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