Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0214
(424 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal pro... 165 9e-42
U10401-7|AAA19056.1| 504|Caenorhabditis elegans Hypothetical pr... 31 0.34
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical... 31 0.34
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ... 28 3.2
Z82268-9|CAD89738.1| 509|Caenorhabditis elegans Hypothetical pr... 27 4.2
Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical pr... 27 4.2
Z81132-2|CAB03431.1| 125|Caenorhabditis elegans Hypothetical pr... 27 4.2
Z68317-2|CAA92690.2| 980|Caenorhabditis elegans Hypothetical pr... 27 4.2
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr... 27 4.2
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr... 27 4.2
AL023835-17|CAD89760.1| 509|Caenorhabditis elegans Hypothetical... 27 4.2
AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical... 27 4.2
U41019-3|AAA82329.3| 531|Caenorhabditis elegans Sop-2 related (... 27 5.5
U82936-1|AAB40869.1| 682|Caenorhabditis elegans protein kinase ... 26 9.7
U82935-1|AAB40868.1| 680|Caenorhabditis elegans protein kinase ... 26 9.7
U29376-5|AAA68709.2| 936|Caenorhabditis elegans Protein kinase ... 26 9.7
U29376-4|AAM51504.1| 682|Caenorhabditis elegans Protein kinase ... 26 9.7
U29376-3|AAM51503.1| 680|Caenorhabditis elegans Protein kinase ... 26 9.7
>AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 9 protein.
Length = 189
Score = 165 bits (402), Expect = 9e-42
Identities = 72/126 (57%), Positives = 97/126 (76%)
Frame = +1
Query: 40 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 219
MK I +N V P+G+T VK+R+V V GPRG ++++F+HL +++ + L+V KWFG
Sbjct: 1 MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60
Query: 220 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKY 399
+KELAA+RTVCSH++NMIKGVT GF+YKMR+VYAHFPIN +GN +EIRNFLGEK
Sbjct: 61 VRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKI 120
Query: 400 IRRVKM 417
+RRV +
Sbjct: 121 VRRVPL 126
>U10401-7|AAA19056.1| 504|Caenorhabditis elegans Hypothetical
protein T20B12.3 protein.
Length = 504
Score = 31.1 bits (67), Expect = 0.34
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -3
Query: 290 LVTPLIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCL 153
L P +++ + ++++LT SFL H T+ F R+S +CL
Sbjct: 275 LTNPSLLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318
>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
protein Y47G6A.29 protein.
Length = 2460
Score = 31.1 bits (67), Expect = 0.34
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Frame = +1
Query: 157 HLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVC---SHVENMIKGVT--KGFQYKMRAVY 321
H+ D++++ + ++ WF ++L ++RT C S ++ I +T KGF + M+A +
Sbjct: 361 HVKHDVKIILTKETCMDIWFMRGEQLESIRTRCGPLSSLDMSILWITTEKGFYWNMKAEF 420
Query: 322 AHF 330
+F
Sbjct: 421 LNF 423
>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
protein D1007.15 protein.
Length = 1184
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +1
Query: 283 VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 420
++ F Y + +++ FPI C+ + I+ + +G Y+R V ++
Sbjct: 1085 LSSSFVYGLSSLWYEFPIKCLLWDAAVIVCLITQIGYSYLRGVHLS 1130
>Z82268-9|CAD89738.1| 509|Caenorhabditis elegans Hypothetical
protein Y37A1B.1b protein.
Length = 509
Score = 27.5 bits (58), Expect = 4.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 15 ARGSTKPKHEANCSKSESQNPRRAYGPCEIAS 110
ARG+ P H ++ ++ S PRRA P +S
Sbjct: 211 ARGNDSPLHRSSAARRHSPPPRRASPPRRTSS 242
>Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 27.5 bits (58), Expect = 4.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 15 ARGSTKPKHEANCSKSESQNPRRAYGPCEIAS 110
ARG+ P H ++ ++ S PRRA P +S
Sbjct: 211 ARGNDSPLHRSSAARRHSPPPRRASPPRRTSS 242
>Z81132-2|CAB03431.1| 125|Caenorhabditis elegans Hypothetical
protein T26E4.2 protein.
Length = 125
Score = 27.5 bits (58), Expect = 4.2
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +3
Query: 21 GSTKPKHEANCSKSESQNPRRAYGPCEIASGDS*RAPRSSQKELQTLGC*HSHGKPSSP 197
GS + NC+ S S + P A S + P++ + LGC S G+P+ P
Sbjct: 32 GSVYSQTAVNCNNSYSDIACQQLYPPAYAYSISSKYPKAGGTGGRPLGCYSSSGRPTGP 90
>Z68317-2|CAA92690.2| 980|Caenorhabditis elegans Hypothetical
protein T01H3.2 protein.
Length = 980
Score = 27.5 bits (58), Expect = 4.2
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 423 RCHLYPSDVFLTQEVTYLNN*ITLSGD-TVNGEVSIHSTHLVLEAF 289
RC L ++F + +T LNN + + GD +++ + S VL F
Sbjct: 477 RCQLMQGELFRSVNITILNNNLQIYGDNSLSKSIDTSSIKSVLPCF 522
>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
protein M110.4b protein.
Length = 1155
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 168 NSQVFEVPFENSAGPFNCHQTRFHMDR 88
+SQ F +PF N++GP N + R M++
Sbjct: 26 SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52
>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
protein M110.4a protein.
Length = 1156
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 168 NSQVFEVPFENSAGPFNCHQTRFHMDR 88
+SQ F +PF N++GP N + R M++
Sbjct: 26 SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52
>AL023835-17|CAD89760.1| 509|Caenorhabditis elegans Hypothetical
protein Y37A1B.1b protein.
Length = 509
Score = 27.5 bits (58), Expect = 4.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 15 ARGSTKPKHEANCSKSESQNPRRAYGPCEIAS 110
ARG+ P H ++ ++ S PRRA P +S
Sbjct: 211 ARGNDSPLHRSSAARRHSPPPRRASPPRRTSS 242
>AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 27.5 bits (58), Expect = 4.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 15 ARGSTKPKHEANCSKSESQNPRRAYGPCEIAS 110
ARG+ P H ++ ++ S PRRA P +S
Sbjct: 211 ARGNDSPLHRSSAARRHSPPPRRASPPRRTSS 242
>U41019-3|AAA82329.3| 531|Caenorhabditis elegans Sop-2 related
(ectopic expressionof hox genes) protein 3 protein.
Length = 531
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -3
Query: 215 NHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVTRRDFT 96
NH ++R+ M T K + TP G L +T + T
Sbjct: 427 NHIPDYKRKDLLKSMDTLKFCEIFRPTPTGALQLTAAEVT 466
>U82936-1|AAB40869.1| 682|Caenorhabditis elegans protein kinase C2
B isoform protein.
Length = 682
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 247 TVCSHVENMIKGVTK-GFQYKMRAVYAH 327
T CSH ++ + G+TK GFQ ++ + H
Sbjct: 50 TFCSHCKDFLWGITKQGFQCQVCTLVVH 77
>U82935-1|AAB40868.1| 680|Caenorhabditis elegans protein kinase C2
A isoform protein.
Length = 680
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 247 TVCSHVENMIKGVTK-GFQYKMRAVYAH 327
T CSH ++ + G+TK GFQ ++ + H
Sbjct: 50 TFCSHCKDFLWGITKQGFQCQVCTLVVH 77
>U29376-5|AAA68709.2| 936|Caenorhabditis elegans Protein kinase c
protein 2, isoformc protein.
Length = 936
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 247 TVCSHVENMIKGVTK-GFQYKMRAVYAH 327
T CSH ++ + G+TK GFQ ++ + H
Sbjct: 190 TFCSHCKDFLWGITKQGFQCQVCTLVVH 217
>U29376-4|AAM51504.1| 682|Caenorhabditis elegans Protein kinase c
protein 2, isoformb protein.
Length = 682
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 247 TVCSHVENMIKGVTK-GFQYKMRAVYAH 327
T CSH ++ + G+TK GFQ ++ + H
Sbjct: 50 TFCSHCKDFLWGITKQGFQCQVCTLVVH 77
>U29376-3|AAM51503.1| 680|Caenorhabditis elegans Protein kinase c
protein 2, isoforma protein.
Length = 680
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 247 TVCSHVENMIKGVTK-GFQYKMRAVYAH 327
T CSH ++ + G+TK GFQ ++ + H
Sbjct: 50 TFCSHCKDFLWGITKQGFQCQVCTLVVH 77
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,367,144
Number of Sequences: 27780
Number of extensions: 216385
Number of successful extensions: 548
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -