Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0214
(424 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos... 145 9e-36
At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim... 142 1e-34
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil... 142 1e-34
At1g05190.1 68414.m00523 ribosomal protein L6 family protein Sim... 40 0.001
At2g18470.1 68415.m02151 protein kinase family protein contains ... 28 2.3
At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6)... 28 2.3
At2g17090.1 68415.m01973 protein kinase family protein similar t... 28 3.0
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont... 27 5.2
At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenas... 27 5.2
At5g07320.1 68418.m00836 mitochondrial substrate carrier family ... 27 6.9
At4g19570.1 68417.m02877 DNAJ heat shock N-terminal domain-conta... 27 6.9
At2g38060.1 68415.m04672 transporter-related low similarity to v... 27 6.9
At1g49270.1 68414.m05524 protein kinase family protein contains ... 27 6.9
At1g03320.1 68414.m00311 hypothetical protein 26 9.1
>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
ribosomal protein L9, cytosolic - garden pea,
PIR2:S19978
Length = 194
Score = 145 bits (352), Expect = 9e-36
Identities = 66/131 (50%), Positives = 95/131 (72%), Gaps = 5/131 (3%)
Frame = +1
Query: 40 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKV 204
MK I++++ + IPDG+ + V ++++ V+GPRG L R+FKHL +D +++ R LK+
Sbjct: 1 MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60
Query: 205 EKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNF 384
+ WFGS+K A++RT SHV+N+I GVT+GF Y+MR VYAHFPIN N IEIRNF
Sbjct: 61 DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120
Query: 385 LGEKYIRRVKM 417
LGEK +R+V+M
Sbjct: 121 LGEKKVRKVEM 131
>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
[Arabidopsis thaliana]
Length = 194
Score = 142 bits (343), Expect = 1e-34
Identities = 64/131 (48%), Positives = 95/131 (72%), Gaps = 5/131 (3%)
Frame = +1
Query: 40 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKV 204
MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++ + LK+
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60
Query: 205 EKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNF 384
+ WFG++K A++RT SHV+N+I GVT+GF+YKMR VYAHFPIN IEIRNF
Sbjct: 61 DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120
Query: 385 LGEKYIRRVKM 417
LGEK +R+V+M
Sbjct: 121 LGEKKVRKVEM 131
>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
thaliana]
Length = 194
Score = 142 bits (343), Expect = 1e-34
Identities = 64/131 (48%), Positives = 95/131 (72%), Gaps = 5/131 (3%)
Frame = +1
Query: 40 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKV 204
MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++ + LK+
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60
Query: 205 EKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNF 384
+ WFG++K A++RT SHV+N+I GVT+GF+YKMR VYAHFPIN IEIRNF
Sbjct: 61 DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120
Query: 385 LGEKYIRRVKM 417
LGEK +R+V+M
Sbjct: 121 LGEKKVRKVEM 131
>At1g05190.1 68414.m00523 ribosomal protein L6 family protein
Similar to Mycobacterium RlpF (gb|Z84395). ESTs
gb|T75785,gb|R30580,gb|T04698 come from this gene
Length = 223
Score = 39.5 bits (88), Expect = 0.001
Identities = 21/86 (24%), Positives = 44/86 (51%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKE 231
+ Q + +P +T+ ++ + + VKGP G L + V++ L+V+K +++
Sbjct: 46 IGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPR-EVELTKEESGFLRVKKTVETRRA 104
Query: 232 LAAVRTVCSHVENMIKGVTKGFQYKM 309
+ +NM+ GV+KGF+ K+
Sbjct: 105 NQMHGLFRTLTDNMVVGVSKGFEKKL 130
>At2g18470.1 68415.m02151 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 633
Score = 28.3 bits (60), Expect = 2.3
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 1 AAGIRHEGQQSPNMKQIVANQKVKIP-DGLTVHVKSRLVTVKGPRG 135
AA IRH G++ P M QIV + ++ D L VK V G G
Sbjct: 536 AASIRHSGRKRPKMSQIVRALEGEVSLDALNEGVKPGHSNVYGSLG 581
>At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6) /
caspase family protein similar to latex-abundant protein
[Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
PF00656: ICE-like protease (caspase) p20 domain
Length = 410
Score = 28.3 bits (60), Expect = 2.3
Identities = 12/48 (25%), Positives = 28/48 (58%)
Frame = +1
Query: 61 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKV 204
+++K+ DG VHV ++ + ++ +LK+N + +++ + P L V
Sbjct: 204 KELKLEDGAKVHVVNKSLPLQTLIDILKQNTGNNDIEVGKIRPTLFNV 251
>At2g17090.1 68415.m01973 protein kinase family protein similar to
Arabidopsis thaliana APK1A [SP|Q06548], APK1B
[SP|P46573]; contains Pfam profile: PF00069 Protein
kinase domain
Length = 465
Score = 27.9 bits (59), Expect = 3.0
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = +1
Query: 10 IRHEGQQSPNMKQIVA 57
+++EGQ+SPN K+IVA
Sbjct: 271 LKYEGQESPNTKEIVA 286
>At3g19320.1 68416.m02450 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560;
Length = 493
Score = 27.1 bits (57), Expect = 5.2
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -2
Query: 240 GGKLLFGSEPFLN-LQETRVYHANVNSQVFEVP 145
GGK L + FLN L+E ++HAN N+ V VP
Sbjct: 187 GGKKL-RLDNFLNKLEEVTIFHANSNNFVGSVP 218
>At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenase
B, chloroplast (GAPB) / NADP-dependent
glyceraldehydephosphate dehydrogenase subunit B
identical to SP|P25857 Glyceraldehyde 3-phosphate
dehydrogenase B, chloroplast precursor (EC 1.2.1.13)
(NADP-dependent glyceraldehydephosphate dehydrogenase
subunit B) {Arabidopsis thaliana}
Length = 447
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 64 KVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI 174
+VKI D T+ V +L+ V R LK + L +DI
Sbjct: 138 EVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGIDI 174
>At5g07320.1 68418.m00836 mitochondrial substrate carrier family
protein similar to peroxisomal Ca-dependent solute
carrier [Oryctolagus cuniculus] GI:2352427
(mitochondrial carrier superfamily); contains
INTERPRO:IPR001993 Mitochondrial substrate carrier
family, INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 479
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +1
Query: 61 QKVKIPDGLTVHVK-SRLVTVKGPRGVLKR 147
++ IPDG++ HVK SRL+ G G + R
Sbjct: 191 EQAVIPDGISKHVKRSRLLLAGGLAGAVSR 220
>At4g19570.1 68417.m02877 DNAJ heat shock N-terminal
domain-containing protein low similarity to SP|Q9QYI4
DnaJ homolog subfamily B member 12 {Mus musculus};
contains Pfam profile PF00226: DnaJ domain
Length = 558
Score = 26.6 bits (56), Expect = 6.9
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +3
Query: 21 GSTKPKHEANCSKSESQNPRRAYGPCEIASGDS*RAPRSSQKE 149
G KPK + +ES P +YGP R PR + E
Sbjct: 141 GMQKPKRSSTPKPTESDKPASSYGPTPPPEPRPKRRPRPNIPE 183
>At2g38060.1 68415.m04672 transporter-related low similarity to
vesicular glutamate transporter 3 [Homo sapiens]
GI:21213895, brain specific Na+-dependent inorganic
phosphate cotransporter [Rattus norvegicus] GI:507415;
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 512
Score = 26.6 bits (56), Expect = 6.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 21 GSTKPKHEANCSKSESQNP 77
GS KP H ++CS S +NP
Sbjct: 5 GSLKPLHHSSCSSSFPRNP 23
>At1g49270.1 68414.m05524 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 699
Score = 26.6 bits (56), Expect = 6.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 1 AAGIRHEGQQSPNMKQIV 54
AA +RH G++ P M QIV
Sbjct: 589 AAAVRHSGRRRPKMSQIV 606
>At1g03320.1 68414.m00311 hypothetical protein
Length = 220
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 147 PFENSAGPFNCHQTRFHMDRKPV 79
P+ +AGPF QTR +MD P+
Sbjct: 183 PYMAAAGPFPYWQTRPYMDANPM 205
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,780,750
Number of Sequences: 28952
Number of extensions: 197640
Number of successful extensions: 510
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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