Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0212
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...   119   4e-28
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    28   0.93 
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    27   2.1  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   5.0  
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    26   5.0  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score =  119 bits (286), Expect = 4e-28
 Identities = 49/103 (47%), Positives = 71/103 (68%)
 Frame = +3

Query: 291 ALYGLYLCFSSAKWATIIMAYVILIAAEVGVTAGAHRLWTHRAYKAKRPLQIILMVMNSF 470
           A+YG++      K  T+I A +    + +G+TAG HRLW+HRAYKAK+PL+  L    + 
Sbjct: 77  AIYGVFTTPLQTK--TLIFAIIYYAYSGLGITAGYHRLWSHRAYKAKKPLEYFLAAGGAA 134

Query: 471 AFQNSAITWIRDHRMHHRYSDTDADPHNATRGFFYSHIGWLLV 599
           AF+ S   W RDHR HHRY+DTD DP+N  +GF+Y+H+GW+++
Sbjct: 135 AFEGSIRWWSRDHRAHHRYTDTDKDPYNVKKGFWYAHVGWMII 177


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 488 HHLDPGPSDAPQIQRHGRRPSQR 556
           HH +  PS  PQ   HGRR + R
Sbjct: 126 HHRERSPSPPPQYDNHGRRLNTR 148


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 459 MNSFAFQNSAITWIRDHRMHHRYS 530
           + SF  Q  +++WI D R+H +Y+
Sbjct: 14  LKSFEEQTESVSWIIDLRLHSKYA 37


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 436 GLLALYARWVQSRWAPAVTPTSAAINMT*AIIIVAHFALLKQRYKPY 296
           GL  L+ RW    WA  +T   A I  T    ++A   ++ Q  + Y
Sbjct: 803 GLETLFNRWYSESWANYLTICGAVIGWTRGTGLMAPNNIVSQGIEKY 849


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 20/71 (28%), Positives = 29/71 (40%)
 Frame = +3

Query: 117 ADNTDIYRTPIMEAKQNNLAPTLEEEAQFEKLIAPQASDRKHEIIYANLITFAYGHISAL 296
           A   D Y   I EA     AP ++  A+ +K   P+A     + I    I  A G    L
Sbjct: 333 ARGLDYYTGIIYEAVTEASAPKIKSSAEKKKSADPEADRSNDDSIGVGSIA-AGGRYDNL 391

Query: 297 YGLYLCFSSAK 329
            G++    +AK
Sbjct: 392 VGMFAAKKNAK 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,442,123
Number of Sequences: 5004
Number of extensions: 48912
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)