Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0212
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0682 - 26691973-26692623,26692681-26692788,26694741-266948...    31   0.94 
03_02_0101 - 5623661-5623669,5623756-5624408,5624504-5624640,562...    28   5.0  
12_01_0258 - 1900564-1901101,1901838-1902004                           27   8.8  
02_05_1116 - 34229234-34229440,34229534-34229593,34229663-342300...    27   8.8  

>03_05_0682 -
           26691973-26692623,26692681-26692788,26694741-26694807,
           26695311-26695422,26695743-26695787,26696163-26696235,
           26696321-26696362
          Length = 365

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +3

Query: 201 FEKLIAPQASDR-KHEIIYANLITFAYGHISALYGLYLCFSSAKWATIIMAYVILIAAEV 377
           F  L  P   DR K    YA+++   Y    A+Y  +L   +   A ++ +  + +  +V
Sbjct: 144 FGMLFLPTDEDRAKVRKTYADVME-TYQSQYAMYKAWLDEDARASAILVASMEVHLTGDV 202

Query: 378 GVTAGAHRLWTH 413
            + A AH +WTH
Sbjct: 203 VILASAHLVWTH 214


>03_02_0101 -
           5623661-5623669,5623756-5624408,5624504-5624640,
           5626032-5626609
          Length = 458

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 330 WATIIMAYVILIAAEVGVTAGAH 398
           WAT++ A V L++A +GV  G H
Sbjct: 110 WATVMGALVQLLSARLGVATGKH 132


>12_01_0258 - 1900564-1901101,1901838-1902004
          Length = 234

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 601 LTSNHPMCE*KKPLVAL*GSASVSLYLWCIRW 506
           + S H   E K+PL+   G+A+ +L LW  RW
Sbjct: 144 MASLHAGTEPKRPLLYPSGAAAAALGLWKCRW 175


>02_05_1116 -
           34229234-34229440,34229534-34229593,34229663-34230073,
           34230357-34230687,34230781-34230867,34230952-34231331,
           34231531-34232105,34233035-34233272
          Length = 762

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 297 YGLYLCFSSAKWATIIMAYV 356
           +GL+LC S   WA +I+ YV
Sbjct: 398 WGLFLCVSIGLWAGLIIGYV 417


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,272,561
Number of Sequences: 37544
Number of extensions: 340671
Number of successful extensions: 867
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)