Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0212
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)              132   2e-31
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)                   30   1.3  
SB_23707| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=2.2)            27   9.0  
SB_43413| Best HMM Match : Extensin_2 (HMM E-Value=4.3)                27   9.0  

>SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)
          Length = 268

 Score =  132 bits (320), Expect = 2e-31
 Identities = 52/77 (67%), Positives = 64/77 (83%)
 Frame = +3

Query: 378 GVTAGAHRLWTHRAYKAKRPLQIILMVMNSFAFQNSAITWIRDHRMHHRYSDTDADPHNA 557
           GVT GAHRLW HR +KAK PL++++M+MNS A QN    W RDHR+HH+YS+TDADPHNA
Sbjct: 19  GVTIGAHRLWAHRTFKAKWPLRLVIMLMNSMAAQNDIFEWSRDHRVHHKYSETDADPHNA 78

Query: 558 TRGFFYSHIGWLLVRKH 608
            RGFF+SH+GWL+ RKH
Sbjct: 79  KRGFFFSHVGWLMQRKH 95


>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
          Length = 3037

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 410  GPESMGACRHSDLCRYQYDVGHNYRRPFRTTEAKI 306
            G  + G  +  D+  Y YD G +Y RPF TT  K+
Sbjct: 2083 GKSTGGDKKEMDMRPYLYDEGDSYERPFYTTLLKM 2117


>SB_23707| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=2.2)
          Length = 445

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 428 GFVRPVGPESMGACRHSDLCRYQYDVGHNYRR 333
           G V P GP S  +CR       +Y VG  YRR
Sbjct: 14  GDVTPTGPLSPSSCRLLKEFALRYGVGELYRR 45


>SB_43413| Best HMM Match : Extensin_2 (HMM E-Value=4.3)
          Length = 529

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 428 GFVRPVGPESMGACRHSDLCRYQYDVGHNYRR 333
           G V P GP S  +CR       +Y VG  YRR
Sbjct: 455 GDVTPTGPLSPSSCRLLKEFALRYGVGELYRR 486


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,922,484
Number of Sequences: 59808
Number of extensions: 392525
Number of successful extensions: 951
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)