Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0212
         (610 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ263748-1|ABB84470.1|   78|Anopheles gambiae para-type sodium c...    24   4.4  
DQ022109-1|AAY51997.1|   66|Anopheles gambiae voltage-gated sodi...    24   4.4  
AJ439353-7|CAD27929.1|  555|Anopheles gambiae putative glycerol ...    23   5.8  

>DQ263748-1|ABB84470.1|   78|Anopheles gambiae para-type sodium
           channel variant 1 protein.
          Length = 78

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 12/54 (22%), Positives = 24/54 (44%)
 Frame = -1

Query: 478 WKANEFITISMICSGLLALYARWVQSRWAPAVTPTSAAINMT*AIIIVAHFALL 317
           W   +F+   MI   +L     W++S W   +    + I    A +++ +F +L
Sbjct: 10  WNFTDFMHSFMIVFRVLC--GEWIESMWDCMLVGDVSCIPFFLATVVIGNFVVL 61


>DQ022109-1|AAY51997.1|   66|Anopheles gambiae voltage-gated sodium
           channel protein.
          Length = 66

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 12/54 (22%), Positives = 24/54 (44%)
 Frame = -1

Query: 478 WKANEFITISMICSGLLALYARWVQSRWAPAVTPTSAAINMT*AIIIVAHFALL 317
           W   +F+   MI   +L     W++S W   +    + I    A +++ +F +L
Sbjct: 4   WNFTDFMHSFMIVFRVLC--GEWIESMWDCMLVGDVSCIPFFLATVVIGNFVVL 55


>AJ439353-7|CAD27929.1|  555|Anopheles gambiae putative glycerol
           kinase protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 5.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 396 HRLWTHRAYKAKRPLQIILMVMNSFAFQNSAITWIRDH 509
           H L T  AY+  R    I  +  S A    A+ W+RD+
Sbjct: 297 HGLVTTVAYQMGRNAPPIYALEGSVAVAGVAMNWLRDN 334


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 637,907
Number of Sequences: 2352
Number of extensions: 13431
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 59291487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)