Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0212
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.58 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   1.3  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    23   3.1  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    23   3.1  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    23   3.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.1  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   9.4  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 195 LPPLRSVRDCFVSLPLSGSD 136
           +PP+R + DC  +  LSG +
Sbjct: 417 IPPIRKISDCSTTSSLSGDE 436


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 128  RHLSDPDNGSETKQSRTDLRGGSTVRKTYSATSFR*KTRDN 250
            RHL  P    + KQS    +  STV    +AT+ R  T DN
Sbjct: 1083 RHLMRPRKRDQ-KQSDDKTKETSTVTAAAAATNIRPGTADN 1122


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +2

Query: 434 ATADHTNGNELVR--LPKLGHHLDPGPSDAP 520
           A+ ++ NG+      L   GHH DPG  D P
Sbjct: 263 ASNNNNNGDMFCHTGLGHYGHHPDPGEVDLP 293


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 410 GPESMGACRHSDLCRYQYDV 351
           GP  +G  +H+D C   +D+
Sbjct: 45  GPNELGRFKHTDACCRTHDM 64


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 410 GPESMGACRHSDLCRYQYDV 351
           GP  +G  +H+D C   +D+
Sbjct: 50  GPNELGRFKHTDACCRTHDM 69


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 410 GPESMGACRHSDLCRYQYDV 351
           GP  +G  +H+D C   +D+
Sbjct: 50  GPNELGRFKHTDACCRTHDM 69


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = -1

Query: 487 AEFWKANEFITISMICSGLLALYARWVQSRWAP 389
           A+ WK N       + S    L   W+++ W P
Sbjct: 89  AQTWKDNRLRLPENMTSEYRLLEVDWLKNMWRP 121


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 434 PLGFVRPVGPE 402
           P G+V+P+ PE
Sbjct: 324 PYGYVKPISPE 334


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 474 FQNSAITWIRDHRM 515
           FQN  + W ++H+M
Sbjct: 56  FQNRRMKWKKEHKM 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,628
Number of Sequences: 438
Number of extensions: 3352
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)