Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0212
(610 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g06080.1 68414.m00637 delta 9 desaturase (ADS1) identical to ... 79 2e-15
At1g06360.1 68414.m00672 fatty acid desaturase family protein si... 78 4e-15
At1g06090.1 68414.m00638 fatty acid desaturase family protein si... 78 4e-15
At1g06120.1 68414.m00641 fatty acid desaturase family protein si... 77 1e-14
At3g15850.1 68416.m02005 fatty acid desaturase family protein si... 76 2e-14
At2g31360.1 68415.m03831 delta 9 desaturase (ADS2) identical to ... 76 2e-14
At1g06100.1 68414.m00639 fatty acid desaturase family protein si... 73 1e-13
At1g06350.1 68414.m00671 fatty acid desaturase family protein si... 71 8e-13
At3g15870.1 68416.m02007 fatty acid desaturase family protein si... 70 1e-12
At1g80460.1 68414.m09423 glycerol kinase, putative similar to gl... 33 0.15
At3g28650.1 68416.m03576 DC1 domain-containing protein similar ... 28 5.6
At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger) fa... 28 5.6
At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product... 27 7.4
>At1g06080.1 68414.m00637 delta 9 desaturase (ADS1) identical to
delta 9 acyl-lipid desaturase (ADS1) GB:BAA25180
GI:2970034 from [Arabidopsis thaliana]
Length = 305
Score = 79.0 bits (186), Expect = 2e-15
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Frame = +3
Query: 288 SALYGLYLCFSSA---KWATIIMAYVILIAAEVGVTAGAHRLWTHRAYKAKRPLQIILMV 458
++L+ +LC + W + +A ++ +G+T HR HR++K + L+
Sbjct: 44 ASLFVHFLCLLAPFNFTWPALRVALIVYTVGGLGITVSYHRNLAHRSFKVPKWLEYFFAY 103
Query: 459 MNSFAFQNSAITWIRDHRMHHRYSDTDADPHNATRGFFYSHIGWL 593
A Q I W+ HR HH+++D+D DPH+ GF++SH+ WL
Sbjct: 104 CGLLAIQGDPIDWVSTHRYHHQFTDSDRDPHSPNEGFWFSHLLWL 148
>At1g06360.1 68414.m00672 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 299
Score = 78.2 bits (184), Expect = 4e-15
Identities = 29/89 (32%), Positives = 49/89 (55%)
Frame = +3
Query: 327 KWATIIMAYVILIAAEVGVTAGAHRLWTHRAYKAKRPLQIILMVMNSFAFQNSAITWIRD 506
KW + +V+ + +T HR HR++K + L+ L FA Q + W+
Sbjct: 54 KWEALRFGFVLYALTSLSITFSYHRNLAHRSFKLPKWLEYPLAYFAVFALQGDPLDWVSI 113
Query: 507 HRMHHRYSDTDADPHNATRGFFYSHIGWL 593
HR HH+++D+D DPH+ GF++SH+ W+
Sbjct: 114 HRFHHQFTDSDRDPHSPIEGFWFSHVWWI 142
>At1g06090.1 68414.m00638 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase GB:BAA25180
GI:2970034 (ADS1) from [Arabidopsis thaliana]
Length = 299
Score = 78.2 bits (184), Expect = 4e-15
Identities = 29/89 (32%), Positives = 49/89 (55%)
Frame = +3
Query: 327 KWATIIMAYVILIAAEVGVTAGAHRLWTHRAYKAKRPLQIILMVMNSFAFQNSAITWIRD 506
KW + ++ I + +T HR TH+++K + L+ FA Q I W+
Sbjct: 54 KWEALRFGVILAIVTSLSITFSYHRNLTHKSFKLPKWLEYPFAYSALFALQGHPIDWVST 113
Query: 507 HRMHHRYSDTDADPHNATRGFFYSHIGWL 593
HR HH+++D+D DPH+ GF++SH+ W+
Sbjct: 114 HRFHHQFTDSDRDPHSPIEGFWFSHVFWI 142
>At1g06120.1 68414.m00641 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase GB:BAA25180
GI:2970034 (ADS1) from [Arabidopsis thaliana]; supported
by cDNA:gi_12083275_gb_AF332434.1_AF332434
Length = 299
Score = 76.6 bits (180), Expect = 1e-14
Identities = 30/88 (34%), Positives = 49/88 (55%)
Frame = +3
Query: 330 WATIIMAYVILIAAEVGVTAGAHRLWTHRAYKAKRPLQIILMVMNSFAFQNSAITWIRDH 509
W A ++ I+ + +T HR THR++K + L+ FA Q I W+ H
Sbjct: 55 WEAFRFAAMVGISTNLSITFSYHRNLTHRSFKLPKWLEYPFAYSALFALQGHPIDWVSTH 114
Query: 510 RMHHRYSDTDADPHNATRGFFYSHIGWL 593
R HH+++D+D DPH+ GF++SH+ W+
Sbjct: 115 RFHHQFTDSDRDPHSPIEGFWFSHVFWI 142
>At3g15850.1 68416.m02005 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 371
Score = 75.8 bits (178), Expect = 2e-14
Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Frame = +3
Query: 330 WATIIMAY-VILIAAEVGVTAGAHRLWTHRAYKAKRPLQIILMVMNSFAFQNSAITWIRD 506
W + +A+ + ++ +G+T HR +H+A+K + L+ + + A Q + I W+
Sbjct: 125 WRAVSVAFGLYIVTGLLGITLSFHRNLSHKAFKLPKWLEYLFAYCGAQALQGNPIDWVST 184
Query: 507 HRMHHRYSDTDADPHNATRGFFYSHIGWL 593
HR HH++ D+D DPH+ GF++SH+ W+
Sbjct: 185 HRYHHQFCDSDRDPHSPLDGFWFSHMNWM 213
>At2g31360.1 68415.m03831 delta 9 desaturase (ADS2) identical to
delta 9 acyl-lipid desaturase (ADS2) GI:2970036 from
[Arabidopsis thaliana]
Length = 307
Score = 75.8 bits (178), Expect = 2e-14
Identities = 27/88 (30%), Positives = 50/88 (56%)
Frame = +3
Query: 330 WATIIMAYVILIAAEVGVTAGAHRLWTHRAYKAKRPLQIILMVMNSFAFQNSAITWIRDH 509
W+ + + ++ +G+T HR HR++K + L+ +L A Q I W+ H
Sbjct: 63 WSALWVTFLFYTIGGLGITVSYHRNLAHRSFKVPKWLEYLLAYCALLAIQGDPIDWVSTH 122
Query: 510 RMHHRYSDTDADPHNATRGFFYSHIGWL 593
R HH+++D++ DPH+ GF++SH+ W+
Sbjct: 123 RYHHQFTDSERDPHSPKEGFWFSHLLWI 150
>At1g06100.1 68414.m00639 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 299
Score = 72.9 bits (171), Expect = 1e-13
Identities = 28/89 (31%), Positives = 47/89 (52%)
Frame = +3
Query: 327 KWATIIMAYVILIAAEVGVTAGAHRLWTHRAYKAKRPLQIILMVMNSFAFQNSAITWIRD 506
KW ++ I + +T HR THR++K + L+ A Q + W+
Sbjct: 54 KWEAFRFGIILAILTNLCITFSYHRNLTHRSFKLPKWLEYPFAYSALLALQGDPLDWVSI 113
Query: 507 HRMHHRYSDTDADPHNATRGFFYSHIGWL 593
HR HH+++D+D DPH+ GF++SH+ W+
Sbjct: 114 HRFHHQFTDSDRDPHSPIEGFWFSHVLWI 142
>At1g06350.1 68414.m00671 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 300
Score = 70.5 bits (165), Expect = 8e-13
Identities = 28/89 (31%), Positives = 46/89 (51%)
Frame = +3
Query: 327 KWATIIMAYVILIAAEVGVTAGAHRLWTHRAYKAKRPLQIILMVMNSFAFQNSAITWIRD 506
KW + V+ + +T HR +HR++K + L+ FA Q + W+
Sbjct: 55 KWEALRFGLVLFALTTLSITFSFHRNLSHRSFKIPKWLEYPWAYSAVFALQGDPMDWVSI 114
Query: 507 HRMHHRYSDTDADPHNATRGFFYSHIGWL 593
HR HH+++D+D DPH+ G +SHI W+
Sbjct: 115 HRFHHQFTDSDRDPHSPKEGLLFSHILWI 143
>At3g15870.1 68416.m02007 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 292
Score = 69.7 bits (163), Expect = 1e-12
Identities = 25/71 (35%), Positives = 43/71 (60%)
Frame = +3
Query: 381 VTAGAHRLWTHRAYKAKRPLQIILMVMNSFAFQNSAITWIRDHRMHHRYSDTDADPHNAT 560
+T HR +HR++ + L+ + AFQ I W+ +HR HH++ +T DPH+ T
Sbjct: 66 ITLSYHRNLSHRSFDLPKWLEYLFAYGGVLAFQGDPIEWVSNHRYHHKHCETQRDPHSPT 125
Query: 561 RGFFYSHIGWL 593
+GF++SH+ W+
Sbjct: 126 QGFWFSHMAWI 136
>At1g80460.1 68414.m09423 glycerol kinase, putative similar to
glycerol kinase (ATP:glycerol 3-phosphotransferase,
Glycerokinase, GK)[Mycobacterium tuberculosis]
Swiss-Prot:O69664
Length = 522
Score = 33.1 bits (72), Expect = 0.15
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +3
Query: 348 AYVILIAAEVGVTAGAHRLWTHRAYKAKRPLQIILMVMNSFAFQNSAITWIRD 506
A+++L EV + +G H L T AYK Q + S A +A+ W+RD
Sbjct: 278 AFILLNTGEVPIKSG-HGLLTTLAYKLGPQAQTNYALEGSIAIAGAAVQWLRD 329
>At3g28650.1 68416.m03576 DC1 domain-containing protein similar to
hypothetical protein GI:4204272 from [Arabidopsis
thaliana] contains weak PHD zinc finger motifs contains
weak PHD zinc finger motifs DC1 domain, a divergent
protein kinase C domain of unknown function.
Length = 665
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3
Query: 410 GPESMGACRHSDLCRYQYDVGHNYRRPFRTTEAKI 306
G E+ H D+C + D+G R P R + +K+
Sbjct: 201 GVETANLLYHCDMCMFNLDIGCAIRNPERVSLSKL 235
>At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|P79263
Inter-alpha-trypsin inhibitor heavy chain H4 precursor
{Sus scrofa}; contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 641
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 446 HTNGNELVRLPKLGHHLDPGPSDAPQIQRHGRRPSQRYQR 565
H N NE + LPK P PSDA + RP R
Sbjct: 13 HLNLNECLTLPKTLDPSSPSPSDASRSSVDPNRPDSSSSR 52
>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
[Arabidopsis thaliana] GI:871782
Length = 748
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +2
Query: 422 QSQEATADHTNGNELVRL-PKLGHHLDP 502
+S ++ DHTNGN L RL P G ++P
Sbjct: 82 ESSPSSYDHTNGNFLSRLSPLQGRKIEP 109
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,881,632
Number of Sequences: 28952
Number of extensions: 263326
Number of successful extensions: 639
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -