Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0210
         (332 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    74   5e-15
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    57   8e-10
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    46   1e-06
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    45   3e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    41   6e-05
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    36   0.001
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    28   0.43 
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    26   1.7  
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    25   2.3  
SPBC887.18c |||transcription adaptor protein |Schizosaccharomyce...    25   3.0  
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    24   7.0  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    24   7.0  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    23   9.2  
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    23   9.2  
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    23   9.2  

>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 74.1 bits (174), Expect = 5e-15
 Identities = 38/95 (40%), Positives = 58/95 (61%), Gaps = 16/95 (16%)
 Frame = +2

Query: 95  VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKET-AKVGDQSTRRMT-------------KA 232
           ++D GTGY+KLG+AGN  P ++ P+ IA +   A  G   + + +             +A
Sbjct: 9   IMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRA 68

Query: 233 VEDLDFFIGDEAFE--ATGYSVKYPVRHGIVEDWD 331
            EDLDFFIG++A +  + GYS+ YP+RHG +E+WD
Sbjct: 69  TEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWD 103


>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 56.8 bits (131), Expect = 8e-10
 Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
 Frame = +2

Query: 71  MGDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDF 250
           M + + A VID G+G  K GFAG+  P+ + PS         VG      +   +   D 
Sbjct: 1   MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHHGIMVGMGQKDS 52

Query: 251 FIGDEAFEATG-YSVKYPVRHGIVEDWD 331
           ++GDEA    G  ++KYP+ HGIV +WD
Sbjct: 53  YVGDEAQSKRGILTLKYPIEHGIVNNWD 80


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 46.4 bits (105), Expect = 1e-06
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
 Frame = +2

Query: 77  DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 256
           D+ P C ID G+G+ K GFAG+  P+ + P+ +   +  +V   S ++        D F+
Sbjct: 8   DNQPIC-IDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQK--------DMFV 58

Query: 257 GDEAFEATG-YSVKYPVRHGIVEDW 328
           G EA    G   ++ P+  GI+++W
Sbjct: 59  GSEAQNLRGLLKIQRPIERGIIQNW 83


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 44.8 bits (101), Expect = 3e-06
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
 Frame = +2

Query: 95  VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 274
           V+D GTG+ K+G+A +  P+F  PS +  +   +  ++     T  V+  D  +GDEA  
Sbjct: 7   VLDNGTGFVKVGYAKDNFPRFQFPSIVG-RPILRAEEK-----TGNVQIKDVMVGDEAEA 60

Query: 275 ATG-YSVKYPVRHGIVEDWD 331
                 VKYP+ +GI+ D++
Sbjct: 61  VRSLLQVKYPMENGIIRDFE 80


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 40.7 bits (91), Expect = 6e-05
 Identities = 24/85 (28%), Positives = 41/85 (48%)
 Frame = +2

Query: 77  DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 256
           + +P+ VID G+ +T+ G+AG + P  I+PS   ++         T R    V++L    
Sbjct: 8   EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYGVRSDV------TGRNKYVVDELQIHA 61

Query: 257 GDEAFEATGYSVKYPVRHGIVEDWD 331
                   G  VK    +GI++DW+
Sbjct: 62  -----PIPGMEVKNGKSNGIIQDWE 81


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 36.3 bits (80), Expect = 0.001
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
 Frame = +2

Query: 74  GDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFF 253
           GD + A VID G+ +T++GF+G   P+ ++PS          G+ S  R           
Sbjct: 8   GDEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYC--------GEFSDGRR---------L 50

Query: 254 IGDEAFEAT--GYSVKYPVRHGIVEDWD 331
            G+E    +  G  +K  +R+G VE+WD
Sbjct: 51  FGEEYIYKSNPGMEIKNAIRNGWVENWD 78


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.9 bits (59), Expect = 0.43
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -3

Query: 189  VSFIAMVDGIINCGSLLPAKPSLVYPVPTSI-TQAGKWSP 73
            V+F  M+  +I+C +++ AKPSL  PV   +    G W+P
Sbjct: 2278 VAFTLMLAQVISCITIMIAKPSL--PVSDRVFPNLGAWNP 2315


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 95  VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQST 214
           VID G+   + G+ G K+P+ +  + ++     K+   ST
Sbjct: 28  VIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRKLSRTST 67


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -3

Query: 219 LRVL*SPTFAVSFIAMVDGII-NCGSLLPAKPSLVY 115
           ++++ S  F + F+A +  ++ N GSL+ AKP + Y
Sbjct: 191 IKLIDSKDFVLGFLAGLSVLLLNTGSLITAKPLISY 226


>SPBC887.18c |||transcription adaptor protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 262 ITDEKIQIFDSLGHPPSTLIANFCS 188
           +T +K+Q   S GH P+T+I+   S
Sbjct: 5   VTVQKVQSASSNGHKPNTVISQIIS 29


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -2

Query: 298 ILYRVSCGFKSFITDEKIQIFDSL 227
           +LY ++CG+  F  D   Q++ ++
Sbjct: 457 LLYEMTCGWSPFYADNTQQLYKNI 480


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 83  LPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAI 181
           L +C  D    + +  FAG  +P F IP   A+
Sbjct: 263 LQSCTPDEKWCFIRSNFAGFDDPSFQIPELAAV 295


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -2

Query: 259 TDEKIQIFDSLGHPPSTLIANFCSFFYRYG*WNNKLWFLVTGKTQFSIPGADIDNTS 89
           TDE   + DSL HP  +++          G  NN   +  T +T+       +D TS
Sbjct: 271 TDESASLEDSLSHPTKSILDQLADKMEVDG-LNNNSNYSATPRTRVVNGQIVLDETS 326


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 164 PSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 274
           P+T  I++         R +  AVED    +G  AFE
Sbjct: 378 PNTYTIQQIQDATRDGLRAVKNAVEDNCLIVGAGAFE 414


>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 272 EATGYSVKYPVRHGI 316
           EATGY V Y V+H I
Sbjct: 194 EATGYGVVYYVKHMI 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,481,318
Number of Sequences: 5004
Number of extensions: 28751
Number of successful extensions: 105
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)