Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0210
         (332 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)               84   2e-17
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   2e-09
SB_56| Best HMM Match : Actin (HMM E-Value=0)                          58   2e-09
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)               57   3e-09
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   4e-09
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)               57   4e-09
SB_56628| Best HMM Match : Actin (HMM E-Value=0)                       56   7e-09
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)                 56   7e-09
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   9e-08
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)                 33   0.044
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)                  29   0.71 
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)                  29   1.2  
SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.8  
SB_54| Best HMM Match : Actin (HMM E-Value=0)                          27   3.8  
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)          27   5.0  
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)          27   5.0  
SB_45840| Best HMM Match : zf-AN1 (HMM E-Value=1.2e-20)                26   8.8  
SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17)                     26   8.8  
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  26   8.8  

>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
          Length = 372

 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 40/70 (57%), Positives = 48/70 (68%)
 Frame = +2

Query: 122 KLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFEATGYSVKYP 301
           K G+   K  Q     TIAIKE+AKVG++S  R  K VEDLDFFIGDEA +   Y+ K+P
Sbjct: 242 KRGYDLAKAVQSNTQGTIAIKESAKVGNKSLGRSAKGVEDLDFFIGDEAIDKPSYATKWP 301

Query: 302 VRHGIVEDWD 331
           +RH IVEDWD
Sbjct: 302 IRHAIVEDWD 311


>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
 Frame = +2

Query: 71  MGDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDF 250
           M D + A VID G+G  K GFAG+  P+ + PS         VG    + +   +   D 
Sbjct: 1   MDDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDS 52

Query: 251 FIGDEAFEATG-YSVKYPVRHGIVEDWD 331
           ++GDEA    G  ++KYP+ HGIV +WD
Sbjct: 53  YVGDEAQSKRGILTLKYPIEHGIVTNWD 80


>SB_56| Best HMM Match : Actin (HMM E-Value=0)
          Length = 375

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
 Frame = +2

Query: 71  MGDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDF 250
           M D + A V+D G+G  K GFAG+  P+ + PS         VG    + +   +   D 
Sbjct: 1   MEDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDS 52

Query: 251 FIGDEAFEATG-YSVKYPVRHGIVEDWD 331
           ++GDEA    G  ++KYP+ HGIV +WD
Sbjct: 53  YVGDEAQSKRGILTLKYPIEHGIVTNWD 80


>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 57.2 bits (132), Expect = 3e-09
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
 Frame = +2

Query: 71  MGDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDF 250
           M D + A V+D G+G  K GFAG+  P+ + PS         VG    + +   +   D 
Sbjct: 1   MEDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDS 52

Query: 251 FIGDEAFEATG-YSVKYPVRHGIVEDWD 331
           ++GDEA    G  ++KYP+ HGIV +WD
Sbjct: 53  YVGDEAQSKRGILTLKYPIEHGIVTNWD 80


>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
 Frame = +2

Query: 77  DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 256
           D + A V+D G+G  K GFAG+  P+ + PS         VG    + +   +   D ++
Sbjct: 4   DEIAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55

Query: 257 GDEAFEATG-YSVKYPVRHGIVEDWD 331
           GDEA    G  ++KYP+ HGIV +WD
Sbjct: 56  GDEAQSKRGILTLKYPIEHGIVTNWD 81


>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
 Frame = +2

Query: 77  DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 256
           D + A VID G+G  K GFAG+  P+ + PS         VG    + +   +   D ++
Sbjct: 4   DDIAALVIDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55

Query: 257 GDEAFEATG-YSVKYPVRHGIVEDWD 331
           GDEA    G  ++KYP+ HGIV +WD
Sbjct: 56  GDEAQSKRGILTLKYPIEHGIVTNWD 81


>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
          Length = 376

 Score = 56.0 bits (129), Expect = 7e-09
 Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
 Frame = +2

Query: 77  DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 256
           D + A V+D G+G  K GFAG+  P+ + PS         VG    + +   +   D ++
Sbjct: 4   DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55

Query: 257 GDEAFEATG-YSVKYPVRHGIVEDWD 331
           GDEA    G  ++KYP+ HGIV +WD
Sbjct: 56  GDEAQSKRGILTLKYPIEHGIVTNWD 81


>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
          Length = 543

 Score = 56.0 bits (129), Expect = 7e-09
 Identities = 26/41 (63%), Positives = 31/41 (75%)
 Frame = +2

Query: 173 IAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFEATGYSVK 295
           IAIKE+AKVG++S  R  K VEDLDFFIGDEA +   Y+ K
Sbjct: 2   IAIKESAKVGNKSLGRSAKGVEDLDFFIGDEAIDKPSYATK 42


>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 52.4 bits (120), Expect = 9e-08
 Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
 Frame = +2

Query: 95  VIDVGTGYTKLGFAGNKEPQFIIPSTIA---IKETAKVGDQSTRRMTKAVEDLDFFIGDE 265
           V D GTG+ K G+AG+  P  I PS +    I+ + KVGD         +E  D  +GDE
Sbjct: 10  VCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGD---------IEVKDLMVGDE 60

Query: 266 AFEAT-GYSVKYPVRHGIVEDWD 331
           A +      V YP+ +GIV +WD
Sbjct: 61  ASQLRYMLEVNYPMDNGIVRNWD 83


>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
          Length = 921

 Score = 33.5 bits (73), Expect = 0.044
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +2

Query: 89  ACVIDVGTGYTKLGFAGNKEPQFIIPSTI 175
           A V+D G G +K+GFAG++ P+ I P+ +
Sbjct: 702 AIVLDNGCGISKIGFAGDRVPRIIQPAVV 730


>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
          Length = 1392

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 95   VIDVGTGYTKLGFAGNKEPQFIIPSTI 175
            VIDVG+   K+GFAG+  P+ + P  +
Sbjct: 1360 VIDVGSHMWKVGFAGDDAPKGVFPPIV 1386


>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
          Length = 580

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
 Frame = +2

Query: 95  VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 274
           V+D G    K+GFA N+ P+  IP+ I     AK    S RR          FIGD+  E
Sbjct: 237 VLDCGACSQKIGFASNQAPR-SIPNAIF---KAK----SERR--------KLFIGDQIEE 280

Query: 275 ATGYSVKY---PVRHGIVEDWD 331
              YS  +   P + G + +WD
Sbjct: 281 CKDYSALFYVLPFQKGFLVNWD 302


>SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1325

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -2

Query: 322  FYDTVAHRILYRVSCGFKSFIT--DEKIQIFDSLGHPPSTLIA 200
            F  T    I Y + C F +F    D K  IFD   HP  +++A
Sbjct: 1192 FDSTDYQPIEYNIDCKFDTFSATIDVKKTIFDLQSHPTDSIVA 1234


>SB_54| Best HMM Match : Actin (HMM E-Value=0)
          Length = 2486

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 95   VIDVGTGYTKLGFAGNKEPQFIIPSTI 175
            VID G+G+ K G + ++ P+ + P+ +
Sbjct: 2098 VIDNGSGFCKAGLSTDESPRVVFPAIV 2124


>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
          Length = 351

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 157 YYSINHSDKRNCKSWRSEYSEDDQGC 234
           Y  ++HSD+RNC    +E+   D  C
Sbjct: 61  YACVDHSDERNCACRSAEFKCPDGKC 86


>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
          Length = 147

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 157 YYSINHSDKRNCKSWRSEYSEDDQGC 234
           Y  ++HSD+RNC    +E+   D  C
Sbjct: 61  YACVDHSDERNCACRSAEFKCPDGKC 86


>SB_45840| Best HMM Match : zf-AN1 (HMM E-Value=1.2e-20)
          Length = 187

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 58  LNNKNGRPFTSLCYRCRHRVY*TGF-CR*QGTTVYYSIN-HSDKRNC 192
           +    G+   + C+ CR +V  TGF CR     VY  ++ +SDK +C
Sbjct: 116 IGKDKGKIKRNRCFMCRKKVGLTGFECR--CGNVYCGLHRYSDKHDC 160


>SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17)
          Length = 1470

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 148  TTVYYSINHSDKRNCKSWRS 207
            T ++Y  +HSDKR C  +++
Sbjct: 1008 TKIFYKFSHSDKRLCNPFQT 1027


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = -2

Query: 265 FITDEKIQIFDSLGHPPST---LIANFCS 188
           F T ++ + FDS G PP     ++ +FCS
Sbjct: 490 FFTPDQCEWFDSFGRPPEAYGQVMTDFCS 518


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,895,392
Number of Sequences: 59808
Number of extensions: 207740
Number of successful extensions: 452
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)