Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0210
         (332 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   2.2  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   2.2  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   2.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   6.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   9.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   9.1  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 135 AKPSLVYPVPTSITQAG 85
           AKPSL+   PT +T  G
Sbjct: 270 AKPSLIDDEPTEVTIGG 286


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 135 AKPSLVYPVPTSITQAG 85
           AKPSL+   PT +T  G
Sbjct: 270 AKPSLIDDEPTEVTIGG 286


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 135 AKPSLVYPVPTSITQAG 85
           AKPSL+   PT +T  G
Sbjct: 270 AKPSLIDDEPTEVTIGG 286


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 149 PQFIIPSTIAIKETAKVGDQSTRRMTKAVEDL 244
           PQ ++PS   +    + G  STR     + DL
Sbjct: 259 PQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDL 290


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +2

Query: 278  TGYSVKYPVRHGIVED 325
            TGY++ Y   HG +++
Sbjct: 1435 TGYTLHYRTAHGNLDE 1450


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +2

Query: 278  TGYSVKYPVRHGIVED 325
            TGY++ Y   HG +++
Sbjct: 1431 TGYTLHYRTAHGNLDE 1446


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,391
Number of Sequences: 438
Number of extensions: 2285
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)