Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0210
(332 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 85 1e-17
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 65 1e-11
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 56 8e-09
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 56 8e-09
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 56 8e-09
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 55 1e-08
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 55 1e-08
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 55 1e-08
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 55 1e-08
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 55 1e-08
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 55 1e-08
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 45 1e-05
At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identica... 42 8e-05
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 42 1e-04
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 36 0.009
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 34 0.027
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 28 1.8
At4g12870.1 68417.m02015 gamma interferon responsive lysosomal t... 27 2.4
At5g35700.1 68418.m04269 fimbrin-like protein, putative similar ... 26 5.5
At4g37660.1 68417.m05326 ribosomal protein L12 family protein ri... 26 5.5
At2g17470.1 68415.m02017 expressed protein contains Pfam profile... 26 5.5
At3g43930.1 68416.m04702 expressed protein predicted proteins, A... 26 7.2
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 26 7.2
At3g15160.1 68416.m01917 expressed protein 26 7.2
At4g24630.1 68417.m03527 zinc finger (DHHC type) family protein ... 25 9.5
At3g04090.1 68416.m00433 major intrinsic family protein / MIP fa... 25 9.5
At2g47790.1 68415.m05965 transducin family protein / WD-40 repea... 25 9.5
At2g45350.1 68415.m05643 pentatricopeptide (PPR) repeat-containi... 25 9.5
At2g35340.1 68415.m04333 RNA helicase, putative similar to ATP-d... 25 9.5
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 85.0 bits (201), Expect = 1e-17
Identities = 43/93 (46%), Positives = 60/93 (64%), Gaps = 11/93 (11%)
Frame = +2
Query: 86 PACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVE-------DL 244
PA VID GTGYTK+GFAGN EP FI+P+ +A+ E+ +S+ + T + DL
Sbjct: 7 PAIVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSKSSSKATWQTQHNAGVAADL 66
Query: 245 DFFIGDEAF----EATGYSVKYPVRHGIVEDWD 331
DF+IGDEA ++ +++ YP+ HG VEDWD
Sbjct: 67 DFYIGDEALAKSRSSSTHNLHYPIEHGQVEDWD 99
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 64.9 bits (151), Expect = 1e-11
Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Frame = +2
Query: 71 MGDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDF 250
+GD A V D GTG K GFAG+ P+ + PS VG R + +++ D
Sbjct: 4 LGDESVAIVCDNGTGMVKAGFAGDDAPRAVFPSV--------VGRPRHRGVMVGMDEKDT 55
Query: 251 FIGDEAFEATG-YSVKYPVRHGIVEDWD 331
F+GDEA G S+KYP+ HG+V +WD
Sbjct: 56 FVGDEAQARRGILSLKYPIEHGVVSNWD 83
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 55.6 bits (128), Expect = 8e-09
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +2
Query: 77 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 256
D + V D GTG K GFAG+ P+ + PS VG + + D ++
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSV--------VGRPRHHGVMVGMNQKDAYV 56
Query: 257 GDEAFEATG-YSVKYPVRHGIVEDWD 331
GDEA G ++KYP+ HG+V +WD
Sbjct: 57 GDEAQSKRGILTLKYPIEHGVVSNWD 82
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 55.6 bits (128), Expect = 8e-09
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +2
Query: 77 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 256
D + V D GTG K GFAG+ P+ + PS VG + + D ++
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSV--------VGRPRHHGVMVGMNQKDAYV 56
Query: 257 GDEAFEATG-YSVKYPVRHGIVEDWD 331
GDEA G ++KYP+ HG+V +WD
Sbjct: 57 GDEAQSKRGILTLKYPIEHGVVSNWD 82
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 55.6 bits (128), Expect = 8e-09
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +2
Query: 77 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 256
D + V D GTG K GFAG+ P+ + PS VG + + D ++
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSV--------VGRPRHHGVMVGMNQKDAYV 56
Query: 257 GDEAFEATG-YSVKYPVRHGIVEDWD 331
GDEA G ++KYP+ HG+V +WD
Sbjct: 57 GDEAQSKRGILTLKYPIEHGVVSNWD 82
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 55.2 bits (127), Expect = 1e-08
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +2
Query: 74 GDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFF 253
G+ + V D GTG K GFAG+ P+ + PS VG + + D +
Sbjct: 4 GEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAY 55
Query: 254 IGDEAFEATG-YSVKYPVRHGIVEDWD 331
+GDEA G ++KYP+ HGIV +WD
Sbjct: 56 VGDEAQSKRGILTLKYPIEHGIVNNWD 82
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 55.2 bits (127), Expect = 1e-08
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +2
Query: 74 GDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFF 253
G+ + V D GTG K GFAG+ P+ + PS VG + + D +
Sbjct: 4 GEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAY 55
Query: 254 IGDEAFEATG-YSVKYPVRHGIVEDWD 331
+GDEA G ++KYP+ HGIV +WD
Sbjct: 56 VGDEAQSKRGILTLKYPIEHGIVSNWD 82
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 55.2 bits (127), Expect = 1e-08
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +2
Query: 74 GDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFF 253
G+ + V D GTG K GFAG+ P+ + PS VG + + D +
Sbjct: 4 GEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAY 55
Query: 254 IGDEAFEATG-YSVKYPVRHGIVEDWD 331
+GDEA G ++KYP+ HGIV +WD
Sbjct: 56 VGDEAQSKRGILTLKYPIEHGIVNNWD 82
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 55.2 bits (127), Expect = 1e-08
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +2
Query: 74 GDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFF 253
G+ + V D GTG K GFAG+ P+ + PS VG + + D +
Sbjct: 4 GEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAY 55
Query: 254 IGDEAFEATG-YSVKYPVRHGIVEDWD 331
+GDEA G ++KYP+ HGIV +WD
Sbjct: 56 VGDEAQSKRGILTLKYPIEHGIVNNWD 82
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 55.2 bits (127), Expect = 1e-08
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +2
Query: 74 GDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFF 253
G+ + V D GTG K GFAG+ P+ + PS VG + + D +
Sbjct: 4 GEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAY 55
Query: 254 IGDEAFEATG-YSVKYPVRHGIVEDWD 331
+GDEA G ++KYP+ HGIV +WD
Sbjct: 56 VGDEAQSKRGILTLKYPIEHGIVSNWD 82
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 55.2 bits (127), Expect = 1e-08
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +2
Query: 74 GDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFF 253
G+ + V D GTG K GFAG+ P+ + PS VG + + D +
Sbjct: 4 GEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAY 55
Query: 254 IGDEAFEATG-YSVKYPVRHGIVEDWD 331
+GDEA G ++KYP+ HGIV +WD
Sbjct: 56 VGDEAQSKRGILTLKYPIEHGIVNNWD 82
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 45.2 bits (102), Expect = 1e-05
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +2
Query: 77 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 256
D+ V D GTGY K GFAG P + P + + + + + K D +
Sbjct: 2 DNKNVVVCDNGTGYVKCGFAGENFPTSVFPCVVG-RPLLRYEESLMEQQVK-----DIVV 55
Query: 257 GDEAFEAT-GYSVKYPVRHGIVEDWD 331
G+ E + YPV +GIV++WD
Sbjct: 56 GETCSELRHQLDINYPVHNGIVQNWD 81
>At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identical
to actin-related protein 5 (ARP5) GI:21489922 from
[Arabidopsis thaliana]
Length = 145
Score = 42.3 bits (95), Expect = 8e-05
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Frame = +2
Query: 74 GDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLD-- 247
GD + A V+D+G+ K G+AG P+ + PS + + + T+ ++ D
Sbjct: 4 GDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVGAIDGNGMDIDDAANTTEDAKESDKE 63
Query: 248 -----FFIGDEA--FEATGYSVKYPVRHGIVEDWD 331
+ G +A F + P + GIV DWD
Sbjct: 64 KGKRKLYTGSQALNFRRDQMEILSPTKDGIVTDWD 98
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 41.5 bits (93), Expect = 1e-04
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 15/101 (14%)
Frame = +2
Query: 74 GDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAI----------KETAKVGDQSTRRM 223
GD + A V+D+G+ K G+AG P+ + PS I ++ K S
Sbjct: 4 GDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGVEAMDVDVDSTKTNSNSEDSK 63
Query: 224 TKAVEDLD---FFIGDEA--FEATGYSVKYPVRHGIVEDWD 331
T++ ++ ++G +A + V P++ GIV DWD
Sbjct: 64 TESEKEKSKRKLYVGSQAMSYRRDHMEVLSPIKDGIVSDWD 104
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 35.5 bits (78), Expect = 0.009
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +2
Query: 245 DFFIGDEAFEATGY-SVKYPVRHGIVEDWD 331
D F+GD+A +G ++ YP+ HG+V +WD
Sbjct: 8 DLFVGDDAEARSGILTLDYPMEHGVVSNWD 37
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 33.9 bits (74), Expect = 0.027
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +2
Query: 95 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 274
V D G G + GFAG++ P+ + P + R + + ++G+E
Sbjct: 5 VCDKGHGMVQAGFAGDEAPKVVFPCVVG-------------RPRDGLNPNESYVGEEGHA 51
Query: 275 ATGY-SVKYPVRHGIVEDWD 331
++K P+ HGIV +WD
Sbjct: 52 NRDILTLKDPMEHGIVNNWD 71
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 95 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQST 214
VID G Y ++G+AG EP+ + + + G+ T
Sbjct: 23 VIDNGASYFRIGWAGETEPRVVFRNIVQRPRHKATGETVT 62
>At4g12870.1 68417.m02015 gamma interferon responsive lysosomal
thiol reductase family protein / GILT family protein
similar to SP|P13284 Gamma-interferon inducible
lysosomal thiol reductase precursor {Homo sapiens};
contains Pfam profile PF03227: Gamma interferon
inducible lysosomal thiol reductase (GILT)
Length = 229
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 316 DTVAHRILYRVSC-GFKSFITDEKIQIFDS 230
D V + Y C G +SFI DE +++FDS
Sbjct: 31 DKVELNLYYESLCPGCQSFIVDELVKVFDS 60
>At5g35700.1 68418.m04269 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893, fimbrin [Schizosaccharomyces pombe]
GI:3057144; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 687
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 124 TGFCR*QGTTVYYSINHSDKRNCKSWRSEYSEDD 225
+ F + TTV+++IN S+K + S + Y DD
Sbjct: 106 SSFLKTSTTTVHHAINESEKASYVSHVNNYLRDD 139
>At4g37660.1 68417.m05326 ribosomal protein L12 family protein
ribosomal protein L12, Liberobacter africanum, U09675
Length = 167
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 176 AIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFEA 277
A+ T VGD S TK E F + E FEA
Sbjct: 76 AVAVTGSVGDASASTETKTAEKTTFDVKLEKFEA 109
>At2g17470.1 68415.m02017 expressed protein contains Pfam profile
PF01027: Uncharacterized protein family UPF0005
Length = 538
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -3
Query: 189 VSFIAMVDGIINCGSLLPAKPSLVYPVPTSIT-QAGKWSPI 70
+ F+A ++ ++N L K PVP ++ Q G W+ +
Sbjct: 485 IEFVARLENLVNAFEELSTKADFRDPVPLNVVDQEGLWTTL 525
>At3g43930.1 68416.m04702 expressed protein predicted proteins,
Arabidopsis thaliana; expression supported by MPSS
Length = 404
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -1
Query: 326 SLLRYRGAQDTLQSILWLQKLHHR*KNPNLRQ 231
S+LRY G L + LWLQK NL Q
Sbjct: 143 SVLRYLGHSSNLVTPLWLQKTLEEKPTQNLVQ 174
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 95 VIDVGTGYTKLGFAGNKEPQFIIPSTI 175
V+D G G K G G ++P +IP+ +
Sbjct: 6 VLDNGGGLIKAGQGGERDPTTVIPNCL 32
>At3g15160.1 68416.m01917 expressed protein
Length = 562
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 186 SFIAMVDGIINCGSLLPAKPSLV 118
SF+ + G+I+ GS LP PS+V
Sbjct: 165 SFLKIFPGLISPGSFLPLFPSIV 187
>At4g24630.1 68417.m03527 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 374
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 143 KEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDE 265
+EP +I +E+ + D++ R K +DLD IGD+
Sbjct: 267 EEPPRVITLPSTTRESGEAEDENVTRRQKVEDDLD--IGDD 305
>At3g04090.1 68416.m00433 major intrinsic family protein / MIP
family protein contains Pfam profile: MIP PF00230
Length = 240
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 93 QAGKWSPIFII*SLLFNYIDI 31
QA W+P+ I+ SL+F Y+ I
Sbjct: 39 QAITWAPLVILTSLIFVYVSI 59
>At2g47790.1 68415.m05965 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; The first 3 exons are
identical to that of GB:AJ224957. This gene appears to
be a truncated version of that in GB:AJ224957; contains
4 WD-40 repeats (PF00400)
Length = 392
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 77 DHLPACVIDVGTGYTKLGFAGN 142
DHL + VI+VGT K+GF G+
Sbjct: 211 DHLES-VINVGTSIGKIGFLGD 231
>At2g45350.1 68415.m05643 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 606
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = -3
Query: 192 AVSFIAMVDGIINCGSLLPAK 130
+VS+ +M+DG + CG ++ A+
Sbjct: 180 SVSYNSMIDGYVKCGLIVSAR 200
>At2g35340.1 68415.m04333 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1110
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 113 GYTKLGFAGNKEPQFIIPSTIAIKETAKVG 202
GYTKLG G +P+ + ++A + ++G
Sbjct: 511 GYTKLGKVGCTQPRRVAAMSVAARVAQEMG 540
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,632,129
Number of Sequences: 28952
Number of extensions: 149094
Number of successful extensions: 441
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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