Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0209
(623 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g32190.1 68414.m03959 expressed protein 32 0.36
At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nea... 31 0.82
At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nea... 31 0.82
At3g46050.1 68416.m04983 kelch repeat-containing F-box family pr... 30 1.1
At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein ... 30 1.4
At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nea... 30 1.4
At2g34940.1 68415.m04289 vacuolar sorting receptor, putative sim... 29 2.5
At5g05530.1 68418.m00600 zinc finger (C3HC4-type RING finger) fa... 29 3.3
At2g14720.2 68415.m01657 vacuolar sorting receptor, putative ide... 29 3.3
At2g14720.1 68415.m01656 vacuolar sorting receptor, putative ide... 29 3.3
At4g31620.1 68417.m04492 transcriptional factor B3 family protei... 28 4.4
At2g22140.1 68415.m02630 expressed protein ; expression supporte... 28 4.4
At5g60930.1 68418.m07643 chromosome-associated kinesin, putative... 28 5.8
At5g15360.1 68418.m01798 hypothetical protein 27 7.7
At3g27580.1 68416.m03446 protein kinase, putative similar to ser... 27 7.7
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 31.9 bits (69), Expect = 0.36
Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 2/85 (2%)
Frame = +1
Query: 169 CPSDYCPTSRCDDQSSCPKPASADCPAPACKCRFNYRRAANGTCIPTRECPPFDCDGDNE 348
CP CP C C C P K F+ +C+ + CP F C
Sbjct: 307 CPKPRCPKPSCSCGCGCGDCGCFKCSCPTLKGCFSC--CKKPSCVSSCCCPTFKCSSCFG 364
Query: 349 EYNPCPPFCPGESCSQATE--DGEC 417
+ P CP SC + + D EC
Sbjct: 365 K-----PKCPKCSCWKCLKCPDTEC 384
Score = 31.1 bits (67), Expect = 0.62
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 184 CPTSRCDDQSSCPKPASADCPAPACKC 264
C + C SCPKP CP P+C C
Sbjct: 296 CCSGLCRPSCSCPKPR---CPKPSCSC 319
>At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 30.7 bits (66), Expect = 0.82
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +1
Query: 130 CADSEILDKCPVDCPSDYCP--TSRCDDQSSCPKPASADCPAPACKCRF-NYRRAANGTC 300
C D + + KC +CP + T +C+D + C + + CP +CK + +Y + +G
Sbjct: 493 CVDKDSV-KC--ECPPGFKGDGTKKCEDINECKEKKACQCPECSCKNTWGSYECSCSGDL 549
Query: 301 IPTRE 315
+ R+
Sbjct: 550 LYIRD 554
>At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 30.7 bits (66), Expect = 0.82
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +1
Query: 130 CADSEILDKCPVDCPSDYCP--TSRCDDQSSCPKPASADCPAPACKCRF-NYRRAANGTC 300
C D + + KC +CP + T +C+D + C + + CP +CK + +Y + +G
Sbjct: 493 CVDKDSV-KC--ECPPGFKGDGTKKCEDINECKEKKACQCPECSCKNTWGSYECSCSGDL 549
Query: 301 IPTRE 315
+ R+
Sbjct: 550 LYIRD 554
>At3g46050.1 68416.m04983 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 370
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -1
Query: 500 TPSCLQKY--FLHLQAGLHGNTMPILPTRWHSPSSVACEQLSP 378
T SC+ K FL++ LH N P P RW S + ++L P
Sbjct: 60 TRSCIGKTESFLYVCLDLHRNCYPDCPPRWFIVSPITKQKLKP 102
>At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 271
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/59 (30%), Positives = 23/59 (38%)
Frame = +1
Query: 145 ILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCPAPACKCRFNYRRAANGTCIPTRECP 321
+L+ C +D C CD S KP S P K R AN +C P + P
Sbjct: 131 LLNTTDTKCLADLCGALHCDFVLSSKKPKSKCNPPAVAKNRHLCESVAN-SCFPVSQGP 188
>At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
(GP:1737218) [Arabidopsis thaliana]
Length = 623
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = +1
Query: 118 TEPPCADSEILD-KCPVDCPSDYCPTSRCDDQSSCPKPASADCPAPACKCR 267
T C D D KCP+ D C+D C + C P CKC+
Sbjct: 484 TYSACVDDHSKDCKCPLGFKGD--GVKNCEDVDECKEKTVCQC--PECKCK 530
>At2g34940.1 68415.m04289 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222
Length = 618
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 115 VTEPPCADSEILD-KCPVDCPSDYCPTSRCDDQSSCPKPASADCPAPACKCRFNY 276
+T C+DSE +CP+ D +C+D C K SA C CKC+ N+
Sbjct: 484 LTFSSCSDSETSGCRCPLGFLGDGL---KCEDIDEC-KEKSA-CKCDGCKCKNNW 533
>At5g05530.1 68418.m00600 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 199
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 502 CVPYEQCTTCPENEERTCLQGLCRPQKCIEKND 600
C+P + T P NE CL+ LC ++ IE +D
Sbjct: 136 CIPAKSIT--PVNECTICLEELCHDEESIETHD 166
>At2g14720.2 68415.m01657 vacuolar sorting receptor, putative
identical to GB:U79960 GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +1
Query: 130 CADSEILDKCPVDCPSDYCP--TSRCDDQSSCPKPASADCPAPACKCRF-NYRRAANGTC 300
C D + + KC +CP + +C+D + C + + CP +CK + +Y + +G
Sbjct: 493 CVDKDSV-KC--ECPPGFKGDGVKKCEDINECKEKKACQCPECSCKNTWGSYECSCSGDL 549
Query: 301 IPTRE 315
+ R+
Sbjct: 550 LYMRD 554
>At2g14720.1 68415.m01656 vacuolar sorting receptor, putative
identical to GB:U79960 GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +1
Query: 130 CADSEILDKCPVDCPSDYCP--TSRCDDQSSCPKPASADCPAPACKCRF-NYRRAANGTC 300
C D + + KC +CP + +C+D + C + + CP +CK + +Y + +G
Sbjct: 493 CVDKDSV-KC--ECPPGFKGDGVKKCEDINECKEKKACQCPECSCKNTWGSYECSCSGDL 549
Query: 301 IPTRE 315
+ R+
Sbjct: 550 LYMRD 554
>At4g31620.1 68417.m04492 transcriptional factor B3 family protein
low similarity to reproductive meristem gene 1 from
[Brassica oleracea var. botrytis] GI:3170424,
[Arabidopsis thaliana] GI:13604227; contains Pfam
profile PF02362: B3 DNA binding domain
Length = 492
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Frame = -3
Query: 441 DAYSSNKMALPILRRLRTALSGAERRAGIVLFIITVTIERRAFSSRYARSVG----CASV 274
D S ++L R S +E+ + L + + R +F+ ++R+ G C +
Sbjct: 129 DDSDSKNISLKKKSRFEAESSSSEKYCLLGLTASNLRLNRVSFTKHFSRANGLTKRCCMI 188
Query: 273 VKSTFAGWRWTVGARRLRTA*LVIASARW 187
+G WT+G R + RW
Sbjct: 189 DLMNLSGESWTLGLRHNKRTGQAFIRGRW 217
>At2g22140.1 68415.m02630 expressed protein ; expression supported
by MPSS
Length = 506
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 259 CRLALDSRRSQASDSLTGHRIGSLDSNQKDSPR 161
C + S D +G RI SLDS +DSPR
Sbjct: 69 CSFGSRALASNREDKFSGKRIISLDSEFEDSPR 101
>At5g60930.1 68418.m07643 chromosome-associated kinesin, putative
microtubule-associated motor KIF4 , Mus musculus,
PIR:A54803
Length = 1294
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/62 (29%), Positives = 24/62 (38%)
Frame = +1
Query: 166 DCPSDYCPTSRCDDQSSCPKPASADCPAPACKCRFNYRRAANGTCIPTRECPPFDCDGDN 345
+ PSD S D C S+ C C+CR A G+C P+ C C N
Sbjct: 1046 ETPSDDAVKS---DVCCCTCSKSSSCKTMKCQCR-----ATKGSCGPSCGCSSVKCSNRN 1097
Query: 346 EE 351
+
Sbjct: 1098 AD 1099
>At5g15360.1 68418.m01798 hypothetical protein
Length = 253
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 376 PGESC-SQATEDGECHLVGRIGIVLPC 453
P +C EDG+CHL G + + L C
Sbjct: 43 PASTCLGPIGEDGDCHLPGGLALPLDC 69
>At3g27580.1 68416.m03446 protein kinase, putative similar to
serine/threonine protein kinase [Arabidopsis thaliana]
gi|217861|dbj|BAA01715
Length = 578
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 175 SDYCPTSRCDDQSSCPKPASADCPAPAC 258
S YC C DQSSC DC P C
Sbjct: 351 SSYCIQPTCVDQSSC--IVQPDCIQPVC 376
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,026,112
Number of Sequences: 28952
Number of extensions: 354813
Number of successful extensions: 1140
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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