Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0208
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    28   1.1  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    26   4.5  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    26   4.5  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   6.0  

>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = -3

Query: 546 YLIRATRFALYLQTLVADVIKPIGFEDDITGESKKELFHIAHHIRCYKVAYAIYV 382
           Y+  +    LYL T   D++  I  E    G +KK++F +AHH++  K+A  + V
Sbjct: 283 YVFGSFETKLYLPTSDLDLVI-ISPEHHYRG-TKKDMFVLAHHLKKLKLASEVQV 335


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 441 ELFHIAHHIRCYKVAYAIYVFFFYCLDGWTSS 346
           E F+I  H+  + V +A+  +F+     W SS
Sbjct: 207 ETFNIWTHLSAFIVFFAVLAYFYPSSSSWVSS 238


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 359 GGRAHSPLGVKWLLEPIDIYN 297
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 204  LQGRNRKGGGIYRCGLTR-GPTTSNK*RYRTVC 109
            L+ R ++  G+YR  LTR  PTT+ K R   +C
Sbjct: 1732 LEIRIKRKDGVYRWNLTRCTPTTNEKNRTSFLC 1764


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,676,276
Number of Sequences: 5004
Number of extensions: 50479
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)