Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0208
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024817-18|AAK68533.1|  342|Caenorhabditis elegans C-type lecti...    29   2.4  
AC024817-15|AAU05552.1|  281|Caenorhabditis elegans Hypothetical...    29   3.2  

>AC024817-18|AAK68533.1|  342|Caenorhabditis elegans C-type lectin
           protein 81 protein.
          Length = 342

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 94  KLIYHTYGAITSLITGGRTSCESAPVDTTTLSISAL 201
           K  Y ++G +  ++ GG TS     +DT  ++  AL
Sbjct: 288 KSTYSSFGTVVGVLVGGATSIPGLSIDTNVIAAPAL 323


>AC024817-15|AAU05552.1|  281|Caenorhabditis elegans Hypothetical
           protein Y54G2A.37 protein.
          Length = 281

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 94  KLIYHTYGAITSLITGGRTSCESAPVDTTTLSISAL 201
           K  Y ++G +  ++ GG TS     +DT  ++  AL
Sbjct: 229 KSTYTSFGTVVGVLVGGATSIPGLSIDTNVIAAPAL 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,896,753
Number of Sequences: 27780
Number of extensions: 284711
Number of successful extensions: 572
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)