Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0206
(513 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 36 0.004
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 35 0.006
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 29 0.54
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 27 1.2
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac... 27 1.6
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po... 27 1.6
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 2.9
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 26 3.8
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p... 25 6.7
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 6.7
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha... 25 8.8
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 25 8.8
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 25 8.8
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 35.9 bits (79), Expect = 0.004
Identities = 26/82 (31%), Positives = 38/82 (46%)
Frame = +3
Query: 51 DLSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKMGVPQ 230
D+ FD + H+ L+ L ++LI L+ T NR + G PQ
Sbjct: 370 DIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKALNAGYLTE----NRYKYDIV--GTPQ 423
Query: 231 GSILGPFLFLIYINDLPSFIES 296
GSI+ P L IY++ L FIE+
Sbjct: 424 GSIVSPILANIYLHQLDEFIEN 445
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 35.1 bits (77), Expect = 0.006
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Frame = +3
Query: 135 ELITSYLSGRIQTVDVKGNRSSGTTLKMGVPQGSILGPFLFLIYINDL----PSFIESRH 302
+++ +LSG I + GN S K+G+PQGSIL FL Y+ DL SF + +
Sbjct: 680 KMLKEHLSGHIVKI---GN--SQYLQKVGIPQGSILSSFLCHFYMEDLIDEYLSFTKKKG 734
Query: 303 EVVLFADDTSLLFKIKRQ 356
V+L D L + ++
Sbjct: 735 SVLLRVVDDFLFITVNKK 752
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 28.7 bits (61), Expect = 0.54
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 258 LIYINDLPSFIESRHEVVLFADDTSLLFK 344
L+Y+ + SF+E+ H VLF D +S F+
Sbjct: 823 LVYVIENTSFVEASHISVLFEDSSSKAFE 851
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 27.5 bits (58), Expect = 1.2
Identities = 16/72 (22%), Positives = 34/72 (47%)
Frame = +3
Query: 288 IESRHEVVLFADDTSLLFKIKRQLQVYDEVNDAISCVVHWFRINNLLLNSKKTKCIKFTL 467
+ R + ++ + + L RQL + E+ND S + + +L++ +C+ L
Sbjct: 184 LNDREKTLMIQEKKNHLIHSLRQLLAFSEINDFPSEIRSYL---EFILSNLDLECLTLCL 240
Query: 468 KCIKSSLNVRQV 503
K IK L + ++
Sbjct: 241 KIIKGILTLDEL 252
>SPBC8D2.19 |mde3||serine/threonine protein kinase
Mde3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 559
Score = 27.1 bits (57), Expect = 1.6
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -1
Query: 237 WNPEVHPFSTWCLKIYF 187
WNP+V P + +C +++F
Sbjct: 307 WNPDVRPTAKYCKEVFF 323
>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 230
Score = 27.1 bits (57), Expect = 1.6
Identities = 33/158 (20%), Positives = 64/158 (40%)
Frame = +3
Query: 30 DCLGIFCDLSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTT 209
D LG F + C+E LVR G++D EL ++ S Q + + S
Sbjct: 34 DTLGTFNPAALPLPCLEKTMLVRSFDAQGLKDAVDELESNLKSSEDQAYALCID-SFSNP 92
Query: 210 LKMGVPQGSILGPFLFLIYINDLPSFIESRHEVVLFADDTSLLFKIKRQLQVYDEVNDAI 389
+ + + QG+I F++ + + + + ++ TSL++ + L N
Sbjct: 93 IGLLMAQGNISFAHAFMMTLGRKCRILTRKFRLAVYL-STSLVYIKQLHLSKPALGNSWP 151
Query: 390 SCVVHWFRINNLLLNSKKTKCIKFTLKCIKSSLNVRQV 503
C+ H + +L + + KC+ + K L Q+
Sbjct: 152 FCLDHSY----ILEDQQHNKCLVHCNQSRKDLLGCSQL 185
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 26.2 bits (55), Expect = 2.9
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 164 DTNSRCERK*IFRHHVENGCTSGFHFGSFFISNIYK 271
D NSRC+ K F H N C H + IS+IYK
Sbjct: 350 DCNSRCDTKYHFLGHKCNSC----HSYNTCISSIYK 381
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 25.8 bits (54), Expect = 3.8
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -1
Query: 81 VQHSQMLWISHRKFQDNH 28
V+H++++W+ RK D H
Sbjct: 523 VEHNKLMWLKDRKMGDGH 540
>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 6.7
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 363 VYDEVN-DAISCVVHWFRINNLLLNSKKTKCIKFTLKCIKSSLNVRQVDSN 512
V+++++ D+ V W + N ++++ KTKC I S V + SN
Sbjct: 129 VWEKIHHDSTGKPVSWSQYNTIIVDDSKTKCAAHPYNHIAVSDFVAKSHSN 179
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 6.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 18 EESHDCLGIFCDLSKAFDCVEHETLVRKLHHYGIRDGALELITSY 152
+ES DCL C L+ A H+T +R++ + R ++ +Y
Sbjct: 3620 DESFDCLVRRCQLTLASMIPYHQTSLREIKKWLRRSELFNVLFTY 3664
>SPCC1322.14c |vtc4||vacuolar transporter chaperone
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 24.6 bits (51), Expect = 8.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 225 VHPFSTWCLKIYFLSHLLFVSFLINRK 145
VHP + LKIY L HL + F N++
Sbjct: 201 VHPNNVTELKIYILKHLPVLVFNPNKE 227
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 24.6 bits (51), Expect = 8.8
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 114 HSDVVSSPMFHVQHSQML 61
H+D+V+ FH QH +L
Sbjct: 234 HTDIVNDVQFHPQHEALL 251
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 24.6 bits (51), Expect = 8.8
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 214 FNVVPEDLFPFTSTVCILPDK*EVISSNAPSLIP 113
+NV E+ F + +C++ D E+ SN +L+P
Sbjct: 137 YNVAQEEFF---AILCVVCDSLEIYHSNLSTLLP 167
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,101,475
Number of Sequences: 5004
Number of extensions: 44102
Number of successful extensions: 135
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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