Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0206
(513 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 36 0.025
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 34 0.077
08_02_0520 - 18121561-18121821,18122216-18122470,18122560-181227... 29 1.7
12_01_1092 - 11362094-11362367,11362739-11362795,11363256-113636... 29 2.9
12_01_0298 - 2250517-2251235,2251331-2251577,2251615-2252951,225... 29 2.9
01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035,380... 28 5.1
06_01_0552 - 3935804-3936145,3936247-3936346,3936600-3936725,393... 27 8.8
01_03_0184 + 13560830-13562981,13563604-13564088 27 8.8
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 35.5 bits (78), Expect = 0.025
Identities = 20/71 (28%), Positives = 31/71 (43%)
Frame = +3
Query: 51 DLSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKMGVPQ 230
D KAFD +EH ++ + H G +E + S V + G + + GV Q
Sbjct: 457 DFEKAFDTIEHSAILSVMQHMGFPLKWIEWVQMVFSTASSAVLLNGVPGNSFKCRRGVRQ 516
Query: 231 GSILGPFLFLI 263
G L LF++
Sbjct: 517 GVPLSLLLFVL 527
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 33.9 bits (74), Expect = 0.077
Identities = 17/85 (20%), Positives = 35/85 (41%)
Frame = +3
Query: 51 DLSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKMGVPQ 230
D+ KA+D +E L L G + + ++ + + G + G+ Q
Sbjct: 258 DMMKAYDRIEWSYLHGCLMRLGFEQDWINTVMRCVTSTRYAIRINGELTDTVVPSRGIRQ 317
Query: 231 GSILGPFLFLIYINDLPSFIESRHE 305
G + P+LFL+ L ++ + +
Sbjct: 318 GDPISPYLFLLCTEGLSCMLQKKEQ 342
>08_02_0520 - 18121561-18121821,18122216-18122470,18122560-18122731,
18122824-18123105,18123159-18123292,18123425-18123508,
18123611-18123901,18123982-18124314,18124620-18124750,
18124826-18124930,18125011-18125167,18125248-18125351,
18125442-18125602,18125800-18126116,18126369-18126650,
18127011-18127312,18127609-18127699,18127771-18127824,
18128110-18128186,18128279-18128438,18128545-18128629,
18129059-18129367,18129514-18129890
Length = 1507
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 30 DCLGI-FCDLSKAFDCVEHETLVRKLHHYGI 119
D LGI F D+ K D +HE L + L YGI
Sbjct: 1168 DVLGISFTDVYKNSDLYQHEVLTKSLDSYGI 1198
>12_01_1092 -
11362094-11362367,11362739-11362795,11363256-11363683,
11364350-11365462
Length = 623
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 42 IFCDLSKAFDCVEHETLVRKL 104
+ D+SKAFDCV H+ +++ +
Sbjct: 293 VVADVSKAFDCVSHDMVLKMI 313
>12_01_0298 -
2250517-2251235,2251331-2251577,2251615-2252951,
2256029-2256188
Length = 820
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +3
Query: 159 GRIQTVDVKGNRSSGT--TLKMGVPQGSIL 242
G ++ +D++GNR +GT TL +GVP +L
Sbjct: 167 GELRALDLRGNRLNGTLDTLLLGVPNLKLL 196
>01_01_0517 +
3803740-3806106,3806226-3806312,3806397-3807035,
3807118-3807282,3807363-3807657,3807739-3807953,
3808125-3808430,3808539-3808602,3808735-3808974,
3809150-3809253
Length = 1493
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/75 (24%), Positives = 35/75 (46%)
Frame = +3
Query: 54 LSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKMGVPQG 233
++K F+C+ +L GIR + + Y G + + + +R+SG + +
Sbjct: 356 VAKVFECLSQRHWFFRLQQAGIRARSALVAVVYQKGLVLSSQSRQSRTSGEMINIISVDA 415
Query: 234 SILGPFLFLIYINDL 278
+G LF Y++DL
Sbjct: 416 DRVG--LFSWYMHDL 428
>06_01_0552 -
3935804-3936145,3936247-3936346,3936600-3936725,
3936802-3936991,3937105-3937338,3937640-3937788,
3937890-3938073,3938159-3938195,3938293-3938508
Length = 525
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 93 VRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKMGVPQGSILGPF-LFLIYI 269
+R+ +H +DG+L+ L+GR D G +K+ Q + P+ + +I
Sbjct: 457 MREEYHLTAKDGSLQSQVMLLNGRALVADENGEIPRLEPVKVDAAQPIAVAPYSIVFAHI 516
Query: 270 NDLPS 284
++ P+
Sbjct: 517 HNFPA 521
>01_03_0184 + 13560830-13562981,13563604-13564088
Length = 878
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 387 ISCVVHWFRINNLLLNSKKTKCIKF-TLKCIKSSLNVRQV 503
+SC V W + N+L + T C F ++ I+ ++V QV
Sbjct: 346 VSCSVFWLFVLNILFSFAGTACCLFIAIRTIQHVVSVAQV 385
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,454,835
Number of Sequences: 37544
Number of extensions: 244981
Number of successful extensions: 608
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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