Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0206
(513 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 80 8e-16
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 64 7e-11
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 54 8e-08
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 48 3e-06
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ... 44 5e-05
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 36 0.022
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 36 0.022
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 36 0.022
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 34 0.069
Z77656-2|CAE17769.1| 724|Caenorhabditis elegans Hypothetical pr... 31 0.48
U55374-7|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated p... 31 0.48
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 31 0.48
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 31 0.48
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 31 0.48
AC024881-2|AAK71414.1| 274|Caenorhabditis elegans Serpentine re... 31 0.64
AC006642-9|AAX88828.1| 339|Caenorhabditis elegans Laterally sym... 29 1.5
AC006642-8|AAF39827.2| 365|Caenorhabditis elegans Laterally sym... 29 1.5
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr... 27 7.9
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 80.2 bits (189), Expect = 8e-16
Identities = 47/135 (34%), Positives = 68/135 (50%)
Frame = +3
Query: 42 IFCDLSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKMG 221
I+ D SKAFD + H+ L+ KL L + +LS R V + SS G
Sbjct: 17 IYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKFATCG 76
Query: 222 VPQGSILGPFLFLIYINDLPSFIESRHEVVLFADDTSLLFKIKRQLQVYDEVNDAISCVV 401
VPQG++L P LF IY+ND+ S + + FADDT L+ + + + + A+ VV
Sbjct: 77 VPQGAVLSPLLFGIYVNDISSILPEKVACKQFADDTK-LYASTPKTESENNLQSALDAVV 135
Query: 402 HWFRINNLLLNSKKT 446
W + + L LN KT
Sbjct: 136 DWTKGSKLTLNQSKT 150
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 63.7 bits (148), Expect = 7e-11
Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +3
Query: 60 KAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGT-TLKMGVPQGS 236
KAFD V H L++KLH +GI +LS R +V V + + GVP+GS
Sbjct: 2 KAFDQVNHSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKVNNHIDPNIHPISSGVPKGS 61
Query: 237 ILGPFLFLIYINDLPSFIESRHEVVLFADD 326
+ GPFLFLI+IN L + FADD
Sbjct: 62 VSGPFLFLIFINSLLLSVPPSISCSAFADD 91
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 53.6 bits (123), Expect = 8e-08
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
Frame = +3
Query: 51 DLSKAFDCVEHETLVRKLHH-YGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKMGVP 227
DL AFD V + L L GI + +YL R+ + S TL GVP
Sbjct: 475 DLRAAFDKVPTKKLCNDLMEAQGIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHTLLGGVP 534
Query: 228 QGSILGPFLFLIYINDLPSFIESRHEVVLFADDTSLLFKIKRQLQVYDEVNDAISCVVHW 407
QGS++ P LF Y+ D+P+ + ++ +ADD S++ + K+ + ++V I + +
Sbjct: 535 QGSVISPNLFTFYLKDMPT--QQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKY 592
Query: 408 FRINNLLLNSKKTKCIKFT 464
+ + ++++K+ F+
Sbjct: 593 LKERGMSISAEKSTVTVFS 611
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 48.4 bits (110), Expect = 3e-06
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Frame = +3
Query: 99 KLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGT-TLKMGVPQGSILGPFLFLIYIND 275
KL +G+ +L R +V + S + + GVPQGS+ GP LF+++IN+
Sbjct: 839 KLAKFGLDSLTCSWYKEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLLFILFINN 898
Query: 276 LPSFIESRHEVVLFADDTSLLFKIKRQLQVYDEVNDAISCVVHWFRINNLLLNSKKT 446
L + + FADD + +Q ++I +V W ++N L L K+
Sbjct: 899 LLIDLAPTINISCFADDVKIFHTDPTIIQ------NSIDIIVSWSKLNELPLAPTKS 949
>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
protein Y113G7B.12 protein.
Length = 1042
Score = 44.4 bits (100), Expect = 5e-05
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +3
Query: 54 LSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGN-RSSGTTLKMGVPQ 230
LS AFD V HE L+ KL+ + + +S + +V V + S ++G P+
Sbjct: 894 LSTAFDKVPHEFLISKLNDFNVHPTLRNWFRKLMSPKTFSVQVNDHLESEKHNCQIGAPR 953
Query: 231 GSILGPFLFLIYINDL 278
GS F+FL++IN L
Sbjct: 954 GSESRQFMFLVFINSL 969
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 35.5 bits (78), Expect = 0.022
Identities = 23/72 (31%), Positives = 31/72 (43%)
Frame = +3
Query: 42 IFCDLSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKMG 221
+F D KAFD VEH+ + + L G DGA + T +R + G
Sbjct: 518 VFIDFKKAFDTVEHQAIWKSLDEQG-ADGAYIDLLKECYKNCTTNFTPFHRPVAVPVTKG 576
Query: 222 VPQGSILGPFLF 257
V QG + P LF
Sbjct: 577 VRQGDPISPNLF 588
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 35.5 bits (78), Expect = 0.022
Identities = 23/72 (31%), Positives = 31/72 (43%)
Frame = +3
Query: 42 IFCDLSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKMG 221
+F D KAFD VEH+ + + L G DGA + T +R + G
Sbjct: 689 VFIDFKKAFDSVEHQAIWKSLDEQG-ADGAYIDLLKECYKNCTTNFTPFHRPVAVPVTKG 747
Query: 222 VPQGSILGPFLF 257
V QG + P LF
Sbjct: 748 VRQGDPISPNLF 759
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 35.5 bits (78), Expect = 0.022
Identities = 23/72 (31%), Positives = 31/72 (43%)
Frame = +3
Query: 42 IFCDLSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKMG 221
+F D KAFD VEH+ + + L G DGA + T +R + G
Sbjct: 428 VFIDFKKAFDSVEHQAIWKSLDEQG-ADGAYIDLLKECYKNCTTNFTPFHRPVAVPVTKG 486
Query: 222 VPQGSILGPFLF 257
V QG + P LF
Sbjct: 487 VRQGDPISPNLF 498
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 33.9 bits (74), Expect = 0.069
Identities = 21/72 (29%), Positives = 31/72 (43%)
Frame = +3
Query: 42 IFCDLSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKMG 221
+F D KAFD VEH+ + + L G + ++L+ T R + G
Sbjct: 40 VFIDFKKAFDSVEHQAIWKSLDEQGADEAYIDLLKECYK-NCTTNFTPFLRPITVPVTKG 98
Query: 222 VPQGSILGPFLF 257
V QG + P LF
Sbjct: 99 VRQGDPISPNLF 110
>Z77656-2|CAE17769.1| 724|Caenorhabditis elegans Hypothetical
protein F07B10.4 protein.
Length = 724
Score = 31.1 bits (67), Expect = 0.48
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = -3
Query: 400 TTHEIASFTSS*TCNCRLILNNKDVSSANNTTSCRDSIKLGKSFIYI 260
TTH + + T+ T +CRL+L +K ++ N+ S +KL F Y+
Sbjct: 489 TTHHVINSTTLFTAHCRLMLLSKSLTIQND--SIVRFVKLSNKFAYV 533
>U55374-7|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated
protein 2, isoform d protein.
Length = 286
Score = 31.1 bits (67), Expect = 0.48
Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = -1
Query: 129 HHP*YHSDVVSSPM-FHVQHSQMLWISHRKFQDNH 28
H P YH D H QHSQ L SH K NH
Sbjct: 55 HDPQYHQDQQQQQQPHHQQHSQHLQHSHHKTYQNH 89
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 31.1 bits (67), Expect = 0.48
Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = -1
Query: 129 HHP*YHSDVVSSPM-FHVQHSQMLWISHRKFQDNH 28
H P YH D H QHSQ L SH K NH
Sbjct: 1695 HDPQYHQDQQQQQQPHHQQHSQHLQHSHHKTYQNH 1729
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 31.1 bits (67), Expect = 0.48
Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = -1
Query: 129 HHP*YHSDVVSSPM-FHVQHSQMLWISHRKFQDNH 28
H P YH D H QHSQ L SH K NH
Sbjct: 1796 HDPQYHQDQQQQQQPHHQQHSQHLQHSHHKTYQNH 1830
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 31.1 bits (67), Expect = 0.48
Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = -1
Query: 129 HHP*YHSDVVSSPM-FHVQHSQMLWISHRKFQDNH 28
H P YH D H QHSQ L SH K NH
Sbjct: 1796 HDPQYHQDQQQQQQPHHQQHSQHLQHSHHKTYQNH 1830
>AC024881-2|AAK71414.1| 274|Caenorhabditis elegans Serpentine
receptor, class sx protein7 protein.
Length = 274
Score = 30.7 bits (66), Expect = 0.64
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +1
Query: 271 TICLVLLSPDTRSYYSQMIHLYYLKLNDNYKSMTK*MMRFR---VWFIGSVSITYY 429
T C+VL + T ++ +I ++Y K +N K TK M R + F+GS IT +
Sbjct: 171 TRCIVLTNTLTVIIFATLITIFYKKSKNNNKESTKVMKRLQFSVAVFLGSWYITIF 226
>AC006642-9|AAX88828.1| 339|Caenorhabditis elegans Laterally
symmetric (defectivein lateral asymmetry) protein 2,
isoform b protein.
Length = 339
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 9 SIWEESHDCLGIFCDLSKAFDCVEHETLVRKLHHYGI 119
SI E+HDC DCV H TL + H G+
Sbjct: 232 SIAFETHDCPVCKSQFMTRMDCVSHHTLEHENHREGL 268
>AC006642-8|AAF39827.2| 365|Caenorhabditis elegans Laterally
symmetric (defectivein lateral asymmetry) protein 2,
isoform a protein.
Length = 365
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 9 SIWEESHDCLGIFCDLSKAFDCVEHETLVRKLHHYGI 119
SI E+HDC DCV H TL + H G+
Sbjct: 258 SIAFETHDCPVCKSQFMTRMDCVSHHTLEHENHREGL 294
>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
C06B8.7 protein.
Length = 3118
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 274 ICLVLLSPDTRSYYSQMIHLYYLKLNDN 357
+ +++L DT+ Y + IHLY ++ DN
Sbjct: 1407 LVILVLFLDTQEYVDRFIHLYKSRVEDN 1434
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,474,880
Number of Sequences: 27780
Number of extensions: 240378
Number of successful extensions: 622
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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