Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0206
         (513 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46640.1 68418.m05744 DNA-binding family protein contains a A...    30   1.1  
At1g15080.1 68414.m01802 phosphatidic acid phosphatase family pr...    30   1.1  
At2g33160.1 68415.m04063 glycoside hydrolase family 28 protein /...    27   5.6  
At1g62110.1 68414.m07008 mitochondrial transcription termination...    27   5.6  
At1g24070.1 68414.m03038 glycosyl transferase family 2 protein s...    27   5.6  
At1g27120.1 68414.m03305 galactosyltransferase family protein co...    27   7.4  
At5g27260.1 68418.m03252 hypothetical protein                          27   9.8  
At3g09090.1 68416.m01069 defective in exine formation protein (D...    27   9.8  
At2g39280.1 68415.m04823 RabGAP/TBC domain-containing protein co...    27   9.8  
At1g16540.1 68414.m01981 molybdenum cofactor sulfurase (LOS5) (A...    27   9.8  

>At5g46640.1 68418.m05744 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 386

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = +3

Query: 48  CDLSKAFDCVEHETLVRKLHHYGI--RDGALELITSYLSGRIQTVDVKG--NRSSGTTLK 215
           C LS A   V    L +  H  GI   +G  E+IT  LSG +   +V G  NRS   ++ 
Sbjct: 209 CILS-ASGAVSRVMLRQASHSSGIVTYEGRFEIIT--LSGSVLNYEVNGSTNRSGNLSVA 265

Query: 216 MGVPQGSILG 245
           +  P G I+G
Sbjct: 266 LAGPDGGIVG 275


>At1g15080.1 68414.m01802 phosphatidic acid phosphatase family
           protein / PAP2 family protein similar to phosphatidic
           acid phosphatase 2a2 [Cavia porcellus] GI:3641336;
           contains Pfam profile PF01569 PAP2 superfamily
          Length = 290

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
 Frame = +3

Query: 6   DSIWEESHDCLGIFCDLSKAFDCVEHETLVRKLH------HYGIRDGALELITSYLSGRI 167
           D  W    D +GIF +++K   C   + +V++ H      H       L  ++ YLSG+I
Sbjct: 127 DFFWRCFPDGIGIFHNVTKNVLCTGAKDVVKEGHKSFPSGHTSWSFAGLGFLSLYLSGKI 186

Query: 168 QTVDVKGN 191
           +  D +G+
Sbjct: 187 RVFDQRGH 194


>At2g33160.1 68415.m04063 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Salix gilgiana] GI:6714524; contains
           Pfam profile PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 664

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +3

Query: 6   DSIWEESHDCLGIFCDLSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVK 185
           ++IW  S     +    SK F C + E     LH+ G RDG +  +   + G I+   V 
Sbjct: 341 NNIWGTSTSKEALKMQCSKTFPCQDVELSNINLHYVG-RDGLVTALCENVGGSIRGKIVP 399

Query: 186 GN 191
            N
Sbjct: 400 AN 401


>At1g62110.1 68414.m07008 mitochondrial transcription termination
           factor family protein / mTERF family protein contains
           Pfam profile PF02536: mTERF
          Length = 462

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 54  LSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQT 173
           +S    C +   L R + ++G ++  LEL+T Y  GR+ +
Sbjct: 423 MSSVLVCTDELFLKRYVRNHGDKELVLELMTIYTRGRVSS 462


>At1g24070.1 68414.m03038 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 552

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 226 LRVPFWVLFYF*YI*TICLVLLSPDTRSYY 315
           + +P W  FY   + T+C+V+ +P  RS+Y
Sbjct: 416 VNIPAWSTFYIPSMITLCIVIATP--RSFY 443


>At1g27120.1 68414.m03305 galactosyltransferase family protein
           contains Pfam profile:PF01762 galactosyltransferase
          Length = 673

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 19  RNRMIVLEFSVTYPKHLTVLNMKHW 93
           R+R++VL   +T   H+TV+   HW
Sbjct: 183 RSRILVLPCGLTLGSHITVVATPHW 207


>At5g27260.1 68418.m03252 hypothetical protein
          Length = 303

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 51  DLSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTV 176
           ++S   +C+ ++ L  K++H GI+D  + +      G IQT+
Sbjct: 261 EISDLDECIRYKALT-KIYHLGIQDVFVSMSVEERLGWIQTI 301


>At3g09090.1 68416.m01069 defective in exine formation protein
           (DEX1) identical to defective in exine formation
           [Arabidopsis thaliana] gi|11138669|gb|AAG31444; contains
           Pfam domain PF01839: FG-GAP repeat
          Length = 896

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 123 DGALELITSYLSGRIQTVDVKGNRSSGTTLKMGVPQGSILG 245
           DG +EL+T+   G I     +G       LK  VPQG  +G
Sbjct: 561 DGKIELVTTDSHGNIAAWTTQGVEIWEAHLKSLVPQGPSIG 601


>At2g39280.1 68415.m04823 RabGAP/TBC domain-containing protein
           contains Pfam profile PF00566: TBC domain
          Length = 771

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 216 MGVPQGSILGPFLFLIYINDLP-SFIESRHEVVLFADDTSLLFK 344
           +GV    + GP+   I+IN LP   +    +V+LF  +  +LF+
Sbjct: 403 LGVQVACVTGPWFLTIFINMLPWESVLRVWDVLLFEGNRVMLFR 446


>At1g16540.1 68414.m01981 molybdenum cofactor sulfurase (LOS5)
           (ABA3) identical to molybdenum cofactor sulfurase
           (LOS5/ABA3) [Arabidopsis thaliana] GI:15407262;
           supporting cDNA gi|15407261|gb|AY034895.1|
          Length = 819

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +3

Query: 249 FLFLIYINDLPSFIESRHEVVLFADDTSLLFKIKRQLQVYDEVNDAISCVVHWFRINNLL 428
           FL +  I      ++S     ++   TSL   +K++LQ     N A  CV+  +   NL 
Sbjct: 329 FLSIAAIRHGFKLLKSLTPSAIWMHTTSLSIYVKKKLQALRHGNGAAVCVL--YGSENLE 386

Query: 429 LNSKKT-KCIKFTLK 470
           L+S K+   + F LK
Sbjct: 387 LSSHKSGPTVTFNLK 401


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,614,320
Number of Sequences: 28952
Number of extensions: 218125
Number of successful extensions: 591
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)