Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0205
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    26   5.8  
SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.7  

>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = -2

Query: 525 KIFKIQPSSAFLS----LYCVSLAHDTKETPRNTLN 430
           K+ K+  +S ++S    LY VSLA D  E  +N LN
Sbjct: 261 KLAKVALASCYISDDSSLYSVSLARDITEAIQNKLN 296


>SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 125

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 519 ISFIKIFTPT*NRSRRGLKDKTS 587
           IS  K+ TP  NRSR G+K  TS
Sbjct: 42  ISSEKLNTPMHNRSRSGIKKHTS 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,117
Number of Sequences: 5004
Number of extensions: 49165
Number of successful extensions: 91
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)