Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0205
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19678| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_2123| Best HMM Match : PKD_channel (HMM E-Value=0)                  28   6.1  
SB_57001| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_52350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_45258| Best HMM Match : RhoGEF (HMM E-Value=2.4e-05)                28   8.0  
SB_38084| Best HMM Match : IL15 (HMM E-Value=4.1)                      28   8.0  
SB_20222| Best HMM Match : SSF (HMM E-Value=0.0045)                    28   8.0  

>SB_19678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 849

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 121 CSHFALICQFYIDAFGS*FIHN 56
           C+HF + C  Y D FG+  IH+
Sbjct: 803 CNHFGMHCILYWDTFGAHIIHS 824


>SB_2123| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 672

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -2

Query: 411 LFIFILTIKYLRVIRVN 361
           L IFI+TIK+LR+IR N
Sbjct: 292 LVIFIITIKFLRLIRFN 308


>SB_57001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1487

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -3

Query: 644  KIGTRLGFEHRCITQHERTGRLIF*ATTTSILSRSKNL 531
            ++G  L   H CITQ E TGR        S   RSK L
Sbjct: 1318 RLGLLLDVLHLCITQFEYTGRKEVRNKNASTAPRSKTL 1355


>SB_52350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -3

Query: 644 KIGTRLGFEHRCITQHERTGRLIF*ATTTSILSRSKNL 531
           ++G  L   H CITQ E TGR        S   RSK L
Sbjct: 42  RLGLLLDVLHLCITQFEYTGRKEVRNKNASTAPRSKTL 79


>SB_45258| Best HMM Match : RhoGEF (HMM E-Value=2.4e-05)
          Length = 322

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/38 (26%), Positives = 25/38 (65%)
 Frame = -1

Query: 343 LTNLVI*LDLS*CLVRIVTLNLFIKDFIIDKYIHLGHY 230
           +  ++I ++++  ++ ++ + +FI+  I+D YIH  HY
Sbjct: 254 IDTIIIVINITNIIIILINI-IFIRGIIVDIYIHCKHY 290


>SB_38084| Best HMM Match : IL15 (HMM E-Value=4.1)
          Length = 164

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 8/19 (42%), Positives = 17/19 (89%)
 Frame = -1

Query: 298 RIVTLNLFIKDFIIDKYIH 242
           RIV +N F+KDF+++++++
Sbjct: 138 RIVIVNSFVKDFVVNRFVN 156


>SB_20222| Best HMM Match : SSF (HMM E-Value=0.0045)
          Length = 471

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/25 (48%), Positives = 20/25 (80%)
 Frame = -1

Query: 220 IINGLYTLAYTDVLIILKF*FLGVR 146
           +I GLY++AYTDV+ ++   F+G+R
Sbjct: 80  LIGGLYSVAYTDVIQLVCI-FIGLR 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,345,478
Number of Sequences: 59808
Number of extensions: 335070
Number of successful extensions: 471
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)