Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0204
         (713 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    31   0.009
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    31   0.009
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    25   0.46 
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    25   0.46 
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    22   4.3  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   5.7  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 31.1 bits (67), Expect = 0.009
 Identities = 12/60 (20%), Positives = 30/60 (50%)
 Frame = +3

Query: 21  LTLITGLCGMTFGFVVSCVCDTDRTATYLALGSFLPMVLLCGIIWPVEGMHLILQWISYI 200
           + ++     ++FG+++SCV  +   A  +     +P +L  G    V  + +  +W+S++
Sbjct: 532 IMILVANVAISFGYLISCVSRSVSMALSIGPPLVIPFLLFGGFFLNVSSIPIYFKWLSFL 591


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 31.1 bits (67), Expect = 0.009
 Identities = 12/60 (20%), Positives = 30/60 (50%)
 Frame = +3

Query: 21  LTLITGLCGMTFGFVVSCVCDTDRTATYLALGSFLPMVLLCGIIWPVEGMHLILQWISYI 200
           + ++     ++FG+++SCV  +   A  +     +P +L  G    V  + +  +W+S++
Sbjct: 532 IMILVANVAISFGYLISCVSRSVSMALSIGPPLVIPFLLFGGFFLNVSSIPIYFKWLSFL 591


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 463 VISSILKCCNRFLGCCMKMSV 525
           V SS+L CC+   GC   + V
Sbjct: 94  VFSSLLSCCSVIFGCIFALKV 114


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 463 VISSILKCCNRFLGCCMKMSV 525
           V SS+L CC+   GC   + V
Sbjct: 94  VFSSLLSCCSVIFGCIFALKV 114


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/46 (23%), Positives = 18/46 (39%)
 Frame = -2

Query: 178 IRCIPSTGHMMPQSNTIGRNEPRAR*VAVLSVSQTQDTTKPKVIPH 41
           + C+   G   P    + R+ P A        S+TQ     K++ H
Sbjct: 47  VNCLLEKGKCTPDGAELKRHLPDALHTECSKCSETQKNGSKKIMRH 92


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 568 FHHTLSQKM*VDLIKQTFSYNTLEIYYNI 482
           +H  L +   VDL    F Y TL I ++I
Sbjct: 356 YHRILGET--VDLFNSLFGYQTLLITFHI 382


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,196
Number of Sequences: 336
Number of extensions: 4065
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)