Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0204
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    32   0.071
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    30   0.29 
SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Ma...    30   0.29 
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    29   0.50 
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    28   1.5  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   3.5  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    26   4.7  

>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 32.3 bits (70), Expect = 0.071
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +3

Query: 9   IRHKLTLITGLC-GMTFGFVVSCVCDTDRTATYLALGSFLPMVLLCGIIWPVEGMHLILQ 185
           I +  T++   C    F F+       +  A    +G+ L +++ CG + PV+ +    +
Sbjct: 544 IFYLFTIVITFCMSAVFRFIALLSTTAEIAALIGGIGA-LVLIIFCGAVMPVQYIGWWFR 602

Query: 186 WISYILPLTKSTESL 230
           WI+Y  P+    ES+
Sbjct: 603 WIAYANPVNYGYESI 617


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +3

Query: 51   TFGFVVSCVCDTDRTATYLALGSFLPMVLLCGIIWPVEGMHLILQWISYILPLTKSTESL 230
            TFG  V+  C   +TA+ +    F  ++   G++ P   +     W+  + P T   E L
Sbjct: 1352 TFGQAVASACPNAQTASVVNSLLFTFVITFNGVLQPNSNLVGFWHWMHSLTPFTYLIEGL 1411

Query: 231  RSMLQRG 251
             S L  G
Sbjct: 1412 LSDLVHG 1418


>SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 181 YSGSATFFRLRNLQSLSDRCYR-EVGLSMYPLSTLDSYQP 297
           YSG ATF RL N++ LS R    ++     P  T  SY+P
Sbjct: 40  YSGIATFGRLENVECLSKRSEDFDIAFIGMPFDTGTSYRP 79


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 491 LQHFKIELITIKNRFQIYSTGLIRNMTAFRDNINTEYKVCSDL 363
           + H K+E +T K   +++S  L  N +     IN EYKV   L
Sbjct: 181 ISHEKLENLTPKQLKEVFSQFLFNNQSKSSLKINLEYKVIKHL 223


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -1

Query: 104 VSSCSVGVTNTGHDETKSHSTQSSDQCE--LVPNS 6
           +S CS+G   T H  + S+S+ S  Q E  L PNS
Sbjct: 154 LSGCSIGPVRTNHSSSLSNSSNSLLQTESSLRPNS 188


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -1

Query: 554  ISKNVGGSD*TDIFIQHPR-NLLQHFKIELITIKNRFQIYSTGLIRNMTAFRDNINTEYK 378
            + K +GGS   ++   +P   +    KI  +  K R+ I +T L +N+T F D I ++  
Sbjct: 1991 LCKIMGGSVSVEVSQNNPTFKICYDLKIHELG-KERYDIIATPLFQNLTEFNDLIKSKVA 2049

Query: 377  V 375
            +
Sbjct: 2050 I 2050


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 651 FCLTKPLSFINLKSNFD*LIFCHPINRIFIIHYLKKCR 538
           FC  K LS+  +K N+D +      N +F++    K R
Sbjct: 287 FCEQKDLSYTTVKDNWDNITVAPSTNVLFLLSVPSKVR 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,953,835
Number of Sequences: 5004
Number of extensions: 62537
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)