Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0204
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0585 - 4774877-4775008,4775150-4775308,4776030-4776131,477...    29   3.7  
12_01_0803 + 7371349-7372146,7372301-7372675                           29   4.8  
06_01_0487 - 3459853-3459917,3460058-3460408,3460991-3461114,346...    28   6.4  
03_06_0737 + 35879723-35879990,35880105-35880201,35880464-358805...    28   6.4  
02_03_0199 + 16263549-16263644,16264941-16265899,16267140-162677...    28   6.4  
08_02_1247 + 25578291-25578305,25579084-25579197,25579497-255796...    28   8.5  

>12_01_0585 -
           4774877-4775008,4775150-4775308,4776030-4776131,
           4776480-4776485,4776655-4777008
          Length = 250

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +3

Query: 177 ILQWISYILPLTKSTESLRSMLQRGWTINVPTVYSGFISTGIWIAIYLTTSIL 335
           +LQ +SY+ P   STE  +       T +  TV   F+ TG+W+A+ + T  L
Sbjct: 102 VLQELSYLEPQPDSTEEKKCA-----TFDKHTVTMLFMITGLWLALVVYTDDL 149


>12_01_0803 + 7371349-7372146,7372301-7372675
          Length = 390

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 144 GIIWPVEGMHLILQWISYIL 203
           G+IW   G HL+ QW+S  L
Sbjct: 369 GVIWKTMGWHLLQQWMSLAL 388


>06_01_0487 -
           3459853-3459917,3460058-3460408,3460991-3461114,
           3461226-3461359,3462277-3462412,3462486-3462834,
           3463994-3464000,3464058-3464226
          Length = 444

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 562 DENSINGMTKNKLIKITFQ 618
           DEN +N  T+ KL++ TFQ
Sbjct: 96  DENGVNASTEKKLLRFTFQ 114


>03_06_0737 +
           35879723-35879990,35880105-35880201,35880464-35880591,
           35880686-35880767,35880855-35880918,35880930-35881022,
           35881120-35881178,35881391-35881826,35882050-35882120,
           35882201-35882351
          Length = 482

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -2

Query: 172 CIPSTGHMMPQSNTIGRNEPRAR*VAVLSVSQTQDTTKPKVIPHNPVISVS 20
           C+ S+GH    +N +   EP A    VLS +Q+   + P V+P   VI+++
Sbjct: 370 CMGSSGHGSTSANAV---EPHA---IVLSSTQSMPPSTPFVLPDTKVIAIA 414


>02_03_0199 +
           16263549-16263644,16264941-16265899,16267140-16267791,
           16267895-16267981,16268253-16268381,16269990-16270036,
           16271337-16271438,16272720-16272843,16272981-16273028,
           16273934-16274026,16274325-16274408,16274536-16274619,
           16274751-16274819,16275531-16275590,16275946-16276017,
           16276957-16277064,16278162-16278238,16278391-16278474,
           16278617-16278728,16278778-16278810,16278811-16278900,
           16279012-16279077,16279163-16279258,16279446-16279497,
           16279723-16279775,16279998-16280018
          Length = 1165

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 131 HRQERAKSQVSSCSVGVTNTGHDETKSHS 45
           HR E+ KS + SCS+ +T+     T +HS
Sbjct: 141 HRSEKKKSTLPSCSI-ITDEASTSTSNHS 168


>08_02_1247 +
           25578291-25578305,25579084-25579197,25579497-25579628,
           25579726-25579854,25580024-25580421,25580503-25580602,
           25580734-25580793,25580881-25580967,25581058-25581186,
           25581260-25581559
          Length = 487

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +1

Query: 178 FYSGSATFFRLRNLQSLSDRCYREVGLSMYPLSTLDSYQPEFG*LFI*PQVF 333
           F S S+TF     + S S RC+  V  S     +L+    ++  + I P+++
Sbjct: 195 FSSSSSTFSLKHRVDSWSPRCHYNVNTSSDKYDSLNEKSEQYNGMIICPRIY 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,893,033
Number of Sequences: 37544
Number of extensions: 354423
Number of successful extensions: 682
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)